G62667


Basic Information

Item Value
gene id G62667
gene name NA
gene type non-coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053117.1
NCBI id CM020914.1
chromosome length 43979800
location 18636726 ~ 18637221 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>TU83911
CTCAGCTGTAACTTCTTGCGAGCTTTGTTTCTGGTGATGTAGTTGGTGGCAGAGCCCCTCTCATACTTTTTTCTTTTGAAGACCTCCCATTTACAAAGGATATGTGACCCTTTACACAAGTTTAGGTAAATGGAATTGTCAAAGAAGTAAGCTGTTAAGAAGCGAACACAACGCTCGCTACGATCAGCAGCAGATGCACGTGTCTTTGACATGCGCGGAGAAGGCGATGGAGGAGGACCCAGATGGTGGTCCTTCGTCCGCctgtataaa

Function

GO:

id name namespace
GO:0022613 ribonucleoprotein complex biogenesis biological_process
GO:0042254 ribosome biogenesis biological_process
GO:0030684 preribosome cellular_component
GO:0030687 preribosome, large subunit precursor cellular_component
GO:1990904 ribonucleoprotein complex cellular_component
GO:0008144 drug binding molecular_function
GO:1901265 nucleoside phosphate binding molecular_function
GO:0005524 ATP binding molecular_function
GO:0097367 carbohydrate derivative binding molecular_function
GO:0017076 purine nucleotide binding molecular_function
GO:0036094 small molecule binding molecular_function
GO:0097159 organic cyclic compound binding molecular_function
GO:1901363 heterocyclic compound binding molecular_function
GO:0000166 nucleotide binding molecular_function
GO:0035639 purine ribonucleoside triphosphate binding molecular_function
GO:0030554 adenyl nucleotide binding molecular_function
GO:0043168 anion binding molecular_function
GO:0032553 ribonucleotide binding molecular_function
GO:0032555 purine ribonucleotide binding molecular_function
GO:0032559 adenyl ribonucleotide binding molecular_function

KEGG:

id description
ko00240 Pyrimidine metabolism
ko03008 Ribosome biogenesis in eukaryotes

RNA

RNA id representative length rna type GC content exon number start site end site
TU83911 True 270 lncRNA 0.47 2 18636726 18637221

Neighbor

gene id symbol gene type direction distance location
si:dkey-98f17.5 LOC103357465,LOC102303189,LOC102202618,LOC102793122,LOC101475617 coding upstream 49011 18574988 ~ 18587715 (+)
cfap73 NA coding upstream 199536 18432817 ~ 18437190 (+)
si:ch211-204d2.4 plekha2 coding upstream 235985 18389111 ~ 18400741 (+)
si:ch211-113d22.2 LOC106098714,LOC103357453,LOC102788116 coding upstream 250473 18382949 ~ 18386253 (+)
LOC120560725 NA coding upstream 254131 18365745 ~ 18382595 (+)
p2rx2 p2rx2 coding downstream 473 18637694 ~ 18642437 (+)
myo1ha myo1h,LOC104945027,LOC102796924 coding downstream 66911 18704132 ~ 18715310 (+)
ube3b ube3b coding downstream 83513 18720734 ~ 18729940 (+)
aldh3b2 LOC103470338,LOC103357480,LOC106944551,LOC103142889,LOC106918406,LOC107097252,LOC101157544,LOC100709454,LOC102306236,LOC104945033,LOC105926931,LOC108234466 coding downstream 92995 18730216 ~ 18736475 (+)
fam222a fam222a coding downstream 157029 18794250 ~ 18841202 (+)
G62656 lztr1 non-coding upstream 19157 18617074 ~ 18617569 (+)
G62613 NA non-coding upstream 105415 18531010 ~ 18531311 (+)
G62560 NA non-coding upstream 134351 18501762 ~ 18502375 (+)
G62559 NA non-coding upstream 136220 18500125 ~ 18500506 (+)
G62532 NA non-coding upstream 136605 18499878 ~ 18500121 (+)
G62732 NA non-coding downstream 110269 18747490 ~ 18748496 (+)
G62741 NA non-coding downstream 135534 18772755 ~ 18773108 (+)
G62755 NA non-coding downstream 227354 18864575 ~ 18864807 (+)
G62796 NA non-coding downstream 328862 18966083 ~ 18982623 (+)
G62836 NA non-coding downstream 447713 19084934 ~ 19086862 (+)
tpcn1 tpcn1 other upstream 161995 18441347 ~ 18474731 (+)
tbx5b tbx5,LOC103470367 other upstream 217136 18407348 ~ 18419590 (+)
G62513 NA other upstream 305496 18330705 ~ 18331230 (+)
setbp1 setbp1,LOC102781608 other upstream 507657 18074768 ~ 18129069 (+)
thbs4a thbs4,LOC104953147,LOC106958346 other upstream 607340 18015405 ~ 18029386 (+)
acacb acacb other downstream 23936 18661157 ~ 18685463 (+)
mvk mvk,LOC102798305 other downstream 100297 18737518 ~ 18742399 (+)
tmem119a LOC103353570,LOC104946818 other downstream 439340 19076561 ~ 19081654 (+)
rasl10a rasl10a other downstream 793180 19430401 ~ 19448950 (+)
c6h2orf68 c21h2orf68,c9h2orf68,LOC104941594,LOC103363183,LOC104920309 other downstream 1122375 19759596 ~ 19763524 (+)

Expression


Co-expression Network