ube3b (ube3b)


Basic Information

Item Value
gene id ube3b
gene name ube3b
gene type coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053117.1
NCBI id CM020914.1
chromosome length 43979800
location 18720734 ~ 18729940 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>XM_039802306.1
CCCCCCCACCACCGACCTAACACACTGGACGAAAGCATTATCCACCAGCAGAAATacaaagttgttgttgttacaaaaCGAACAAAGATAGGTTGGCATATAGCTAGACATTCTATCGACAAATACTCTCCCGATTTATACATCTCTAGACAAACGCTACCCGGACGCATTTAGTGCGGCACAGGGATTAATGGCTGCAGTCGATGTACGGATCTGCTCTCATTGTTTACATTTCTAAACGGTATGTCACCCGTGTTTTTTAGGCTGTCATTGATACGGGATCAAACCTAACCCCGCAATGATGATAAATAACGCTAAATGAATGTGAAGAGATTCTCTGTAAGACAGTATCAAGTGGAGCAGCGGCGAACTAGCCTTGTCTGCTAACTATCCCAGCTCCATCTTTCCTGTGTCGCCCGCTGCTCCAGAGATGGCAAGTTAGTCTTcatctttgtttggttttcCGCCCGCTCGGATCTCAAGGACAACCAAATGACTGAGGGGGTATAGCGCCAGGGGCGCCTATAGGCCAGGCAAAATCTTAATTTGAGGAATATTGCAGGTGCACAATGTTTAGTGTACCTCAAAGCGCCAAGTCCGAGTTCCTGGACAAAGCCAGGCAGGCcagggaggaaaggagaggacaTAAGGACAAGGAAAAATCAGCAATCCACATCCAAGCCCTGGTCAGGAGATTTCTCTGTCGCTGCAGACTCCAGAAGCAAATACGGAAAGAGGTTGATGACTATTTTCAAGCTTCTGAAACTGGGACATCAAAAAGAAATGCACTTTCAATTTTCAAAATTGCTCGGAAATTACTATTCGTATATTGCCAAGAGGATAAGATGAGGTTCGAGAAGCTCTGTCGTGCAATCCTTGCCAGCATGGAGGTTGAAAATGAACCGAAAGTCTGGTATGTTTCCTTGGCTCTCTCCAAAGACCTCACCATTCCTTGGCTCAAACAGATAAAAGATGTACTGTGGACCTGCTGTCAACTACTGAAAAATTTAAAGCCTGACATACTTCAGGACAATAAATTGGTAACGCTGTACCTCACCATGCTGGTGACCTTCACAGACACTTCAACCTGGCGGATAGTCCGAGGGAAGGGAGAAGCTCTAAGACCCGCTTTGACGAGGATTTGTGAAAATATTATGGGCCATCTCAATCAAAAGGGATTCTATTCAATACTCCAGATCTTGCTGACCAATGGCTTGGCTCGTACTAAACCATCTCTCTCCAAAGGCACTCTAACAGCTATCTTCTCTTTGTCATTAAGGCCAGTCATTGCTGCTCACTTTTCTGATAACCTGCTAAGATCATTCCTCCTTCACATCATGTCAGTTCCAGCCATTGTATCTCACCTCAATGTGCTTACTCCAGAGTGTATGGCGTCCATCCAGACGCATGACCTGCTGCGGAAGTTCATTCTGTTTCTCAGCCGGGAAGAACAGTGTTTggacatctgtgtgtgtcttgaggGGAGCCACACACTCTGCTTACTTGGCAATCTGATTCATTTGGGCTTCCTTAATGAGAAAGTCCTTGAAGAGGAGGCCAATCATTTTGTGAAGGACCTGACTGACATGCTGTCCTACTGCCAGAGATATGTATCCCAAAAGAAGTCCAACCTTACCCACTGGCACCCTGTCCTGGGCTGGTTCTCTCAGACTGTAGACTACGGTCTGAATGAGTCGATGCCGCTGGTCACTAAACAGCTCCAGTACCTGTGGGGTGTTTCTGTCATTCGGACGCTCTTCAGCGACGTCCTCTCTAAAAAGCTGGAGAGTCAGGAGCCCACTCCCCCACCCCCGCAGCCTAGCACATCACAAAACAATCTACCAGTTAAAAACCTCTTCAAGCGAGCGTTTCAGAAGTCGGCTTCTGTACGGAACATCCTGAAACCAGTTGGAGGGAAGCGAGTCGACTCAGCTGAAGTTCAGAAGGTGTGCAGCATCTGTGTGCTCTACCAGACTGCTCTGTCTACATTAACGCAAATACGACTCCAGATACTCACCGGTCTGACACATCTCGATGAACTTTTGCCCAAACTTTGGGCCTTCATCTGTGAGCTGGGTCCTCAGGGAGGCCTCAAACTCTTCATGGAGTGTCTGAACAATGACACTGAAGAGTCCAAGCAGCTCCTGGCTATGCTCATGCTCTTCTGTGACTGCTCACGGCACCTCATCACaATTCTGGATGACATTGAAGTCTATGAAGAACAAACATCTTTCAAGATCGAGGAACTCCTCACAATCTCTTCATTTCTGAACACATTTGTGTACAAGATGATATGGGATGGCATCTTAGAAAACGCTAAAGGAGAGAAACTGGAGTTGTTTCACAGTGTTCATGGCTGGTTGATGGTGCTTTATGAGCGGGACTGCAGGCGACGATTCACCCCTGATGATCACTGGCTACGCAAGGACCTGAAGCCCAGCCTGTTGTTCCAAGAGCTGGAGAAAGGCAAGAGAAGAGCCCAGCTTTTACTACAGTACATCCCGCATGTCATTCCACATAAAAACAGGGTGCTGCTGTTCAGGAACATCGTtacaaaggaaaaagaaagtTTAGGATTGGTAGAAACCAGCTCTGCTTCACCACATGTCACCCATATTACCATTCGTCGCTCACGGATGTTAGAGGATGGATATGACCAGCTCCGCAGATTACCAGCAAATTCCATAAAAGGCGTTATTCGTGTAAAGTTTGTCAACGACCTGGGAGTAGACGAGGCTGGTATCGATCAGGATGGTGTGTTCAAAGAGTTTCTGGAGGAGATCATTAAGAAAGTGTTCAATCCTGCTCTCAACCTGTTCAGGACTACGAGTGGAAATGAAAGGTTGTATCCTTCACCCACATCTTACATCCATGAGAATCATTTGCAGCTGTTTGAGTTTGTGGGGAAGATGCTTGGGAAAGCCATATATGAGGGCATTGTTGTGGACGTCCCTtttgcctccttcttcctcAGTCAAGTCTTGGGTCACCACCACAGCACTTTCTACAGCTCCATCGACGAGCTGCCCTCGCTGGACTCTGAGTTTTACAAGAACCTCACTTCCATTAAGCGCTATGATGGAGATGTAGGGGATCTAGGACTGACATTATCCTATGATGAGGATGTTATGGGGCAGCTTGTGTGTCATGAGTTGATACCTGGGGGGAAAACCATGCCAGTCATCAACGAAAACAAGATCAGCTACATTCACCTCATGGCTCACTTCCGGATGCACACACAGATTAAGGAGCAAACGGGCGCTTTCATTCGAGGCTTCCGCAGCATCATTAACCCAGAGTGGCTGCACATGTTTTCCACGCCCGAGGTTCAGCGCCTTGTCTCGGGAGACAATGCCGAGATTGATCTGGATGACCTCAAGAAACACACGGTCTACTATGGAGGTTTTCACAGCAGCCATCGTGTCATCATCTGGCTGTGGGACATCCTGTCCAGTGACTTCACTGCTGAAGAGAGGGCTATGTtccttaaatttgttaCCAGCTGCTCTAGGCCGCCTCTTCTAGGTTTCGCCTACCTCAAACCACCTTTCTCCATCCGTTGTGTGGAAGTTTCAGATGATCAGGACACCGGAGACACCCTTGGCAGTGTTCTTAGGGGCTTTTTCACAATCCGCAAGAAGGAGCCTGGTGGTCGACTTCCCACTTCATCAACATGCTTCAACCTGCTAAAATTGCCCAATTACAGCAAGAAGAGCATCTTGCGCGACAAGCTGCGCTACGCTATCAGTATGAACACAGGCTTTGAGCTCTCCTAACTCAGTTGCATCAGGACAATCTTCACAGGAGTCAAAGTCACAAGTCAAAGGGGCATCACCTAAACAAAAGTGGATTCATAAAGGACCTACAAACTctccttttgtctcttttttttttttaacaatcagCCCACTCCCTTGCATTAAAGGGGATGCTGTTTCTGCAGCACAATCCAATTTTTTGCATCTCCCTTTGCCAAAATTCAACGTCTTGTAGGCCTATTTATCTTGATGAAATATCGATATACAGTGGGTAGATCTCTGTTTCTCAGGCTTAACAGAATCATGCTCGCACTCCCATTTAAAGCGAactagaaagcaatacagaTGCAATGCAAGCCATTAGACACGTGGTCAACTCACTCGAGTAAAACCAAGCGATGCATTGTTAATATACTTACAAGCTCGGACTCCATTATCCAAGCAACTTTTAGCTGATATTGGATGAGtcttaaaatgttttgctgAACATAATGCAGCTTTCATAAATGGAAGACAAATCAATGTCTTGTGTTCAACCTCCATGGAGTAGTGGCTCACAGCAGTGATCCTGTGTTGATTACATTATGTCCCATTTTGAGGAGAATCATTTTGACCTGACTCCATTTTCCCCCACTACAAGACGCTGCAGTGCCCTGAGAAAGATGTCCGCCCTCTGGTTTTTATGTTCTCGTTTGAACATCTGCCTCAGTTCTGGTGAAGCAGCACAAtttcttgacaaaaaaaaaatggatcatGCTGTTTGATTTAGAAAAGATGTCCTTGCTGTAGCATTTTTGCTTTTGAGTAAAAAAGAAACTGGAAATGTTTGGGCATTATTTGTATCTGCCCAGCGAAGCAGATACAGCTGTTCATTGGAACACGTCTGTGCTTGaccactcttaaaaaaaaaaaaaaaaaaaaaaatatatgtagtgAAGGTAATCAATAATGTAAGTGTTCATACTAAATACTAGAAAAACTGAAGATTTCTCACTACACCTTTGTATAACGCTGAGTGCCTCATATAATGCCACCCCCCTTTGCTCTCACGTCTGACTGTATTCCAATTGTAACCAATAACCACGTTTATGGGAAACAAGCCATAGAAACGGGGGCTATGTACCTGGACTTTATCTCTCGCTCCTGCTAACAAAAAAGCGCAGAAACCCAACCACTCTATTACCACTGGAACAACAACAACCGAGGAGGGTTTTACTACGATGCCCTCGGATCTCTGTGGACTTTTTAAGCCATGCGGAAAATGAATTTTGAGGTTTAAAAACCTTTCAACATGATGTCATGGACTGGTTGGTCAACCAAATGTGACTGCTTGATTTAATGTTCCCTTGGATGGAAATGTTGCGCACCTTTCTGCCGTTTGTGGCTGTTGGGGTAAAAGGGACATGAGGGTGAATGTTACCCCATCAGCCTAAATACTACTTTACACAGGGTTCAATTAGATCATAAAGGAAAGGAAGTTAGTCATTTAGCAGAAAGAGGACTGTAACTTTTAAaggattaaaaagaaaatatttaccATGTTCTTTATTATGCAAAACAAGTTTTTTTCTGTCATGAATGAGTATGTGTTAATAAGTAACACAAGCTTTAGAGCATACTGGTCATTATTGTTTCTAACTAGTAATATAATGGCGATTAACTtgtgggaaaacaacaaaaaagtgatTATAATGATATAAGACTGGTTGTATTGAATTTACCTGCAGTATACTAATGAGATTACACTATTTTCAGATCTGACAAATCAGTCCTGAGGATCTTACTCCAGCTTTTCTCCTTTTAATCTATTCCAGCAAGAAGTGGAAACACTGTGAATGGATTTATGCGACATGCTACACctggtgtgtgttagtgtgcaaAAGAGATGAAAGATACCTCACAAGCTTGTCTGTCTCGTGATGAGGTCACTCATCGGTTTTAAAAATGATGTCAAGACTAGGCTAGACTTTAAGTGTAACAGTGGACTGCTAAAGCTGACCTTTGACTATCTGCTCTTTtagtacaaaaaataaaaatgatcctGGAAATGTTCCCACCC

Function

symbol description
ube3b Predicted to enable ubiquitin protein ligase activity. Predicted to be involved in protein polyubiquitination and ubiquitin-dependent protein catabolic process. Human ortholog(s) of this gene implicated in Kaufman oculocerebrofacial syndrome. Orthologous to human UBE3B (ubiquitin protein ligase E3B).

NR:

description
PREDICTED: ubiquitin-protein ligase E3B

GO:

id name namespace
GO:0016567 protein ubiquitination biological_process
GO:0004842 ubiquitin-protein transferase activity molecular_function

KEGG:

id description
K10588 UBE3B; ubiquitin-protein ligase E3 B

RNA

RNA id representative length rna type GC content exon number start site end site
XM_039802306.1 True 5817 mRNA 0.44 27 18720734 18729940

Neighbor

gene id symbol gene type direction distance location
myo1ha myo1h,LOC104945027,LOC102796924 coding upstream 5424 18704132 ~ 18715310 (+)
p2rx2 p2rx2 coding upstream 78297 18637694 ~ 18642437 (+)
si:dkey-98f17.5 LOC103357465,LOC102303189,LOC102202618,LOC102793122,LOC101475617 coding upstream 133019 18574988 ~ 18587715 (+)
cfap73 NA coding upstream 283544 18432817 ~ 18437190 (+)
si:ch211-204d2.4 plekha2 coding upstream 319993 18389111 ~ 18400741 (+)
aldh3b2 LOC103470338,LOC103357480,LOC106944551,LOC103142889,LOC106918406,LOC107097252,LOC101157544,LOC100709454,LOC102306236,LOC104945033,LOC105926931,LOC108234466 coding downstream 276 18730216 ~ 18736475 (+)
fam222a fam222a coding downstream 64310 18794250 ~ 18841202 (+)
LOC120560157 tchp,LOC102799482 coding downstream 142342 18872282 ~ 18878090 (+)
ankrd13a ankrd13a coding downstream 166683 18896623 ~ 18904773 (+)
sgsm1a sgsm1 coding downstream 194375 18924315 ~ 18952142 (+)
G62667 NA non-coding upstream 83513 18636726 ~ 18637221 (+)
G62656 lztr1 non-coding upstream 103165 18617074 ~ 18617569 (+)
G62613 NA non-coding upstream 189423 18531010 ~ 18531311 (+)
G62560 NA non-coding upstream 218359 18501762 ~ 18502375 (+)
G62559 NA non-coding upstream 220228 18500125 ~ 18500506 (+)
G62732 NA non-coding downstream 17550 18747490 ~ 18748496 (+)
G62741 NA non-coding downstream 42815 18772755 ~ 18773108 (+)
G62755 NA non-coding downstream 134635 18864575 ~ 18864807 (+)
G62796 NA non-coding downstream 236143 18966083 ~ 18982623 (+)
G62836 NA non-coding downstream 354994 19084934 ~ 19086862 (+)
acacb acacb other upstream 35271 18661157 ~ 18685463 (+)
tpcn1 tpcn1 other upstream 246003 18441347 ~ 18474731 (+)
tbx5b tbx5,LOC103470367 other upstream 301144 18407348 ~ 18419590 (+)
G62513 NA other upstream 389504 18330705 ~ 18331230 (+)
setbp1 setbp1,LOC102781608 other upstream 591665 18074768 ~ 18129069 (+)
mvk mvk,LOC102798305 other downstream 7578 18737518 ~ 18742399 (+)
tmem119a LOC103353570,LOC104946818 other downstream 346621 19076561 ~ 19081654 (+)
rasl10a rasl10a other downstream 700461 19430401 ~ 19448950 (+)
c6h2orf68 c21h2orf68,c9h2orf68,LOC104941594,LOC103363183,LOC104920309 other downstream 1029656 19759596 ~ 19763524 (+)
vps13a vps13a other downstream 1671007 20400947 ~ 20442093 (+)

Expression


Co-expression Network