RNA id: XM_039802870.1


Basic Information

Item Value
RNA id XM_039802870.1
length 5268
RNA type mRNA
GC content 0.48
exon number 21
gene id pcsk5b
representative False

Chromosome Information

Item Value
chromosome id NC_053117.1
NCBI id CM020914.1
chromosome length 43979800
location 20226320 ~ 20300395 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

CCAGAGTGTCAGCTAGTTATTTGTGGGGAGGCGCTGTAGCCATTTCGCCACATGAAAGCCCGATGAGCTGAACGACCAACATCCGAGTTGTTTGGGGAGAAGAGAAATCAGCTTTGAGGAGcaccgcacgcacacacacgtacacgaACTCGCGCGCACAGACACGtacacttcctcctcctccgccgtggaaaaaagagagagagagagggggacagagagagggcaCACGAAACGCAAACTTCCAACTCTCCCATGTGGAAAGCAGAGGTTTGAGGATAAGGTTTATTTGTTCCTCTTCGGGGCTCCGttccttcccccctctctccctctctctcttgaaGTGTTTTGCCCGGATAGTTGTGTGTCTATGAGAGTCTTGCTCGCCGAGAAGAGAAGTTTGGTTGTTTGCCTGGTcggctgaggaggaggaggaggagaagagtcGGGTTAAAAGTGGGGGAAGATGGTCCGCAACGCCGCTTGGAGAAGAAGCTTGCTTTGCGTTCTGGCGCTCAGTCTCAGCTTTGCGTCCCCGCCGTGCAATGCTCGGATTTACACCAACCACTGGGCAGTCAGGATAGCCGGTGGAGCCGATGTGGCCGAGCGGATAGCGGATAAATATGGCTATAGGAACATGGGACAGATTGGGGATCTCAAAGACCACTATCACTTCTTCCATAGCCGGACCATCAAGAGATCTACTTTGTCCAGCCGCGGTCGCCATAGTTTCATCTCCATGGAGCCCAAGGTGGAGTGGATACAGCAGCAGGTGGTGAAGAGGAGGATCAAGAGGGATTACAAGCCAGTGCCGCCCTTTTCACTTACAAGCCCCGCCCACAGCAACCCCGACCAGAACAACATATTCTATAATGATGCCAAGTGGAGCAGTATGTGGTACATTCACTGTAACGACGACGTCCATAACTGCCAGTCGGACATGAACATCATGGGGGCGTGGAAGAGGGGCTACACGGGTAAAGACGTAGTGGTGACCATACTAGATGACGGCATCGAGAggaaccacccagacctctttCAGAACTAcGACCCTCAAGCCAGCTATGATGTCAACGGTAACGATATGGATCCCATGCCTCGATATGACGCAACCAACGAGAACAAACACGGGACGCGGTGTGCGGGCGAAGTTGCTGCAGCCGCAAACAACTCCCACTGCATTGTGGGAATTGCATACAATGCCAGAATAGGAGGTGTGCGAATGCTGGATGGTGATGTAACCGATATGGTGGAGGCCAAGTCTCTGAGCCTCCAGCCGCAGCACATCGACATCTACAGTGCCAGCTGGGGACCTGATGACGATGGAAAGACAGTGGATGGACCCGCATCTCTGGCCAGGCAGGCCTTCGAGAATGGCATCCGCATGGGGAGGAAGGGGCGGGGCTCCATCTTCGTGTGGGCTTCAGGCAACGGTGGGCGCAGCAGAGACCATTGCTCCTGCGACGGCTACACCAACTCTATCTACACCATCTCCATCTCCAGCACAGCTGAGAGCGGACGCAAGCCATGGTACCTGGAGGAATGCTCGTCCACACTGACCACCACCTACAGCAGCGGCGAGAACTACGACCGAAAGATTaTCACAACAGACCTGAGACATCGATGTACAGACAGTCACACAGGGACATCGGCCTCGGCTCCCATGGCTGCTGCCATTATTGCTCTGGCCCTGGAGGCAAATCCTCTTCTAACATGGAGAGATGTTCAACACATAATTGTAAAGACCTCTAGAGCCGGACATCTCAGTGCCCCTGATTGGAAGACCAATGCTGCTGGTTACAATGTCAGCCACCTATATGGCTTTGGTCTGATGGATGCTGAGGCGATGGTGAAAGAGGCGGAGCGATGGAAGCAAGTCCCTTCTCAGCACGTCTGCGTAGAGAGCGCAGACCGACAAATaagAACTATCCGTCCAGAGCATGTGGTTCGGTCAGTGTACAAGGCAACAGGATGCACTGACAACCCCAACCACCATGTGATCTACCTGGAGCATGTGGTTGTACGCATTACAATCACACACCCTCGCCGTGGGGACCTGTCAATCAATCTGACCTCACCTTCGGGGACCAAGTCTCAGCTGCTTGCCAACAGGTTGTTTGATCACTCCATGGAGGGCTTTAAGAACTGGGAGTTTATGACCACCCACTGCTGGGGAGAGAAGGCAGCAGGCGACTGGGTCCTAGAGATCTACGATTCACCTTCTCAACTCCGCAGTCAGAAAGTACCTGGCAAGCTGAAGGAGTGGTCACTGGTGCTGTATGGCACCTCTGTGCACCCATACTCGCCTCTGCGCAGCGATAAGCCCCGCTCCACAGACATGCTGACGCCCACCGATGAGGAGTTCACAGAGGAGTACAACGGGCCCTGTGACTCTGAATGCAATGAGAATGGCTGTGAAGGCCCTGGACCCCATCACTGCATCAACTGCCTCCACTACTTCCTCAAGTTCAAGAACAACACCAGGATGTGTGTGTCGGAGTGCCCCAGTGGCTTTTTTCGTGATGATAGGAAGCGCTGCAAGAAGTGCTCCTCGTTGTGTGAGACCTGCGTTGGTAGCCGTGGCGACCAGTGCACCACATGCAGGACTGGTTTCCACCTCAACGAGGGCTCCAACATGTGTGTCGCCAACTGTGGCGACGGCTTCTACCTCGACCATGACTCCAACATTTGCAGGAGATGTCCAGAGAACTGTAAGAAGTGCACCACCTCCAATATCTGCTCAGAATGTAAACCTGGAACGAGTCTTCAAGGAAACAAGTGTCAGATGACGTGTGACCCAGGGACTTATTACAACGGCCACAGAAGGACTTGTGAAACCTGTCATCCGGCATGTGCCACATGTGCAGGCACAGGTATAGAGGCGTGCACAAAGTGTGCAGACGGCTACTTACTTGAGGACTGGCGGTGTGTTTTAACATGCAGCTCTGGCTACTACCTGTCAGAGCAGACCTCAGACAATGGGCAGGTGCAGAGGTCCTGTAAAAAGTGTGACCATAGCTGCTACGAGTGCTCAGGGCCCGGTGAAAGGAACTGCAGCAGCTGTGTCAGTGGTTACAATCTGGAGGCAGGAGCCTGTGTGGTCAGCACCATCTGCAAAGATGAATCTTGGGCAGAAGGCAGTTTCTGTGTGCTTGTtaaaaagaacaatctttgcCAGAGGAAAGTGCTGCAGCAACTGTGCTGCAGAACGTGCTCGCAAAAGGGCTGACGGGACGTACTCGCTGGGCGTTAAGGGAGCGCGGGGGGGGATGTGGGGGCACATGGGGCACCCCTCCTTCTTGAACCCCCCCTGCCCACTCATTCACAGTCACATAATTTATAAGAAAATCTGTGCCTCTTAAAGGGACTGCATCGGAGGTGCGATGACAGGACTACAACAAACCTACCTTTTTTCTGtactgggacacacacacgttgTCAGGGTGTAAAACGACTGGGACTTATTTCAAGAACAAACgaacaaatgaaaacaaaagtgaaaacaaacaaaagaataaAAGTGTCGGCATTTTGTGACCAAAGCATCGATGCCAAAATAATTgaaccttcttttttttgttgccagtgTAGGAAGTATATCTTAAAACAGGAGCCACTGAGCCTGTGAATCTCTGAATACGTCTGtgtgcatttttattttggctcctcttcctcctctctttccagTGTTAACGATAAACAGATGGAAAGTGACTATACAGTAGGAAAGGCCCTGGTTTTTCTGCCTGTAAATATAcgtcaaaggaaaaaaaagaagctcacTCAGTtatgtgaaaataatgtctgtCTGGGCTGACTTTGGCTGTgtagggaagaaaaaaaacgcacacagatgcacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacaatgatacATATGTACCCCACACATACATTAATAAACATGAATtcagacacatactgtatatcagccACCACTTGAAGTTAGTTAGGTGCTACTGTGTCACAGTATCCCAAGACTGATGCACATTACTAACCAAAATCACctcattacatttatttaaaaacataaacctGCCCTCTGAatattgtgtgttttgtctttatcggtgtgtgtgtgtgtaagagaatGCCATTAATTCGTAATGTGAGCCCAGACAGCATTAATTCATTCCAGTGGTACTACAAGACGAGTCGATAGTCATTCCTTCCGGAGCTTTCTGCAGGGAACGAAACGCTGCAGTGAGTTATAATGAATTTGTggtactagggatgcaccgatgcCTATTCTTCACTCATGATGCTGAATCTGGACTCTGGAAACTTTTGCCCAAAACTGAGTATTGATTCCATCCATTACTGTGACAGAACAATTTAAGGCTCCACCATTACTTTGTTGTCACTGGataaaataattgaaatatTTGTTGCAGGGAACTGCAATTCTTCTGTGGTGGTTTGGTCTTCCACATACCATATGTTACCCAGATAAAGGGAATTTTGTCCAATAATTATCATTGACctctatcggtgcatccctatatGTTACTGTTGTCAAAAGAAATAGATTTGTAGAAGTTTCCACTCTTCGTCATTCCATTATGATGGCAATGCATATCAACTGAAGTATTGCTCTACACTTTAAACACAGAAGATCAATGACAGTACAGAAAGTATTCTGTTATGTTTCATGTGCAGGTAAAGGTCTCTGACAGGCTGACAGACTACAAACTCCTGTGGTGCAAAGCAGAGCTGTGGTGGTTTTGCTTATTTCAGAAAAGGgattttgttcaaaatgtagaTATTGAATCACATTAGGGAGTAGAACTGCATATTCAGTCAACCCAAGAAAAATTGGAAAACAAACCCAATGAGTCAATCAATTTGGTTTGTATTCACATAACtgttaaaagtgaaaatgaagtgACTGCATCACTGCAGAACCAGGAATGTGTCCGAAATCATATTGAGCCAAAACTGTACTTGTGTTAAGGGCGATCAGATTTGTGGGTTCTCCTCCTGTCGGTCTGTCTCTGAACCTTACCTGATGAAACTCAAAGGTTATTCTGGTGGTGCTGGTTTCTAATAAAGAACCGCAAATATAATGTTTAAGATTCTTATTCTATTTGTGTGGGTTTTCACACCTGCAGCTTAAGCATCTACAGTATTAGATGAATTGTTGTACTGTCAACTGGTTATGGTTCTTGATGATTTGTAATAAAGGTTGATAAATCCCCTTTTTTGGTTAACGAAAA

Function

GO:

id name namespace
GO:0006508 proteolysis biological_process
GO:0016020 membrane cellular_component
GO:0004252 serine-type endopeptidase activity molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU84680 lncRNA upstream 199169 20026910 ~ 20027166 (+) True G63204
TU84679 lncRNA upstream 199580 20025755 ~ 20026755 (+) True G63203
TU84678 lncRNA upstream 200587 20024913 ~ 20025748 (+) True G63202
TU84668 lncRNA upstream 207923 20018117 ~ 20018412 (+) True G63192
TU84666 lncRNA upstream 209674 20016232 ~ 20016661 (+) True G63190
TU84965 lncRNA downstream 110368 20392407 ~ 20392631 (+) True G63385
TU84955 lncRNA downstream 159672 20441711 ~ 20442055 (+) False vps13a
TU84956 lncRNA downstream 160115 20442154 ~ 20442952 (+) True G63377
XR_005639468.1 lncRNA downstream 276301 20558340 ~ 20564445 (+) True LOC120560275
TU85049 lncRNA downstream 283629 20565668 ~ 20566142 (+) True G63451
XM_039804647.1 mRNA upstream 5705 20191919 ~ 20220630 (+) True LOC120561477
XM_039804650.1 mRNA upstream 5705 20191919 ~ 20220630 (+) False LOC120561477
XM_039804651.1 mRNA upstream 5705 20191919 ~ 20220630 (+) False LOC120561477
XM_039804649.1 mRNA upstream 5705 20191919 ~ 20220630 (+) False LOC120561477
XM_039804634.1 mRNA upstream 34869 20182407 ~ 20191466 (+) False LOC120561473
XM_039803158.1 mRNA downstream 30522 20312561 ~ 20327903 (+) True LOC120560539
XM_039802114.1 mRNA downstream 71203 20353242 ~ 20381491 (+) False foxb2
XM_039802110.1 mRNA downstream 82570 20364609 ~ 20381491 (+) True foxb2
XM_039802111.1 mRNA downstream 82570 20364609 ~ 20381491 (+) False foxb2
XM_039802112.1 mRNA downstream 82570 20364609 ~ 20381491 (+) False foxb2
TU84360 other upstream 777385 19434907 ~ 19448950 (+) False rasl10a
XR_005639481.1 other upstream 1545174 18661157 ~ 18681161 (+) False acacb
TU83744 other upstream 1806745 18416128 ~ 18419590 (+) False tbx5b
TU83742 other upstream 1810329 18407387 ~ 18416006 (+) False tbx5b
TU83701 other upstream 1895105 18330705 ~ 18331230 (+) True G62513
XR_005639482.1 other downstream 195773 20477812 ~ 20488838 (+) False wdr31
XR_005639483.1 other downstream 195773 20477812 ~ 20488838 (+) False wdr31
TU85087 other downstream 394378 20676417 ~ 20677916 (+) True G63480
XR_005639510.1 other downstream 1306837 21588876 ~ 21598799 (+) False LOC120560787
TU85622 other downstream 2647860 22929899 ~ 22930205 (+) True G63905

Expression Profile