RNA id: XM_039802949.1


Basic Information

Item Value
RNA id XM_039802949.1
length 2239
RNA type mRNA
GC content 0.50
exon number 10
gene id LOC120560432
representative False

Chromosome Information

Item Value
chromosome id NC_053117.1
NCBI id CM020914.1
chromosome length 43979800
location 21672207 ~ 21679064 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

AGTGCAACCACTTTTGAGAATTTGTGATAACATTTGTAACCctgtgaaaatgttttaatgtgtaaggacattttaaaaagttaaatcCGACGCATGGTCTTGGAAATATTATTACTGGTTTTGTGGTGTAGCCTAATAGGTGTACTATAGGCCTACTATCTTTAAATTAACTCAAATTACATATAttgaattaaatgatttaatcagACCGCTCGCAGTGGCCCCCATGTAAGGAATTGTACATTATAAATTGTAGGCTACCACAGATAATATAAAGGTGTAGGATTTGTATCTACACCACCTGCGCAGTCCGGTCAGAGCTGGCACTCGTTCACACAACTTCCTGCCGAGTCATCGGGACAGACGCGCAGCTCCGCCCCGGGACTCTGGCCTCCTCCAGCTCCGCTCGTCCTCATTGGCAACAGCGCAGACAGGACGGAGATGTCCGCTGCGGGGAAAGGTGAACCGACAGCACCGGGTGATTGTCAAAGGTCTGAAACGATCCACGTCGCCGTGAAAAGTCTCACAGAGAGCAAAGACTTCACCGTTAGGGAAGGCTGCACCGTCAGACAGctgaaATGGGGTGTAGCAGAGCGCCTGGGAGTCCCGGCAGAGCAGCTGGTGCTGAGCCACTCCGGCCGGGTGCTCGAAGGGTCAGAACTCCTGAGTCATCTTAAAGAACAAGATGAGTCAGTCTGTCTCTGCATGATCCAAAGGTCTCAGCATTTATCTGCTGCGACCACCTGTGATCCAGGTTCAGAAATGGTCCAGTCGGAGCTCACAGCCCTTCTCGATCCTGACCCTGATAGCTTCACACCGTCTCCCACCTCTCCCCTTTGTCTGGTGGAAGGTCTGGACAGTCTTGGCCTAACAAATAGTGGGCCTGGCTTCTTTCCTGCACTCCAGCGTCCGATGGAGAGCCAGCTTCTGGCTGACCCGGAGATGATGTGCCGTGTCCTGGGCAGCCCCTTCGTGCAGAGCACCCTCTCTACCTACAGCCCTCAACTAACGAGACAGCTCATTCTATCTAACCCCCAAATTCAGCAGCTCCTGCAGACAAACCCAGAGGTGGGGGATATCCTTAACCACACAGTTCTTATCACACAGGTGACGGAGCGTGTCAGGAACCCTGACATGATAGGGGAAGTGATGCATGATGAAGACAGAGCATTAGTCAATTTGCAGCCAGAGCAGGAAAACCCTGAAAGCATCACTGGTGATTCTGATGGGTTTCAGAAAAATGTCCAGATCCAGACAGGAGCACCTCCAGTGGTGACTACATCATCTGGGACTCAACAGCCAACTGAAAGAGAAAGCAACGAGACTCCACAGGTCTCCAGTCCCTCCACGGATCCTCTCAGAGAATGGACCGCCACGGCCAGAGTTGACCCAAACCCTCAGAGCACTGTTACTGCAGGCATGCAGTCACTGCTAGAGGAGGTCATGGCCAGTCCAGGACTGATGGAGAGCCTGCTCTCTGGCCCTTATGTCAGCAGTCTCCTCAATTGCCTCGGTCAGAACCCTGACCTGGCTGCACAGATGCTGCTGAGTCACCCTTTGTTCTCAGGATAtcctcagctgcagcagcagatgaGACAGCAGATCCCTCTCTTCCTGCAACAGATGCAGAGTCCAGAGCTGCTGTCAGCCATGTTGAACCCCAGAGCCATGGAGGCTCTGCTGCACATCCAACACGGCCTACAGACTCTGGCTGCAGAGGTTCCTGCAGTGATACCTACGTCCATGTTGAGGAGGCTGAGTTCCAGGACGAGCTGGAGCATCTGAGCTCAATGGGCTTCGGAGACCGAGAGGCAAACCGTCAGGTTCTCATCAGGACTGGAGGAGACCTCACTACTGCTATACAACATCTGCTCAGTctctgacacatacacacacacacacacagatgttgtTCTGtccacatatacatacataagtGGATGCACATATACCTATTAAATAGAAGCACCCAATACACTAAAACATAATAATATCATTATCAGCaattacaaagtgctttacaaaaaacaaacataggAGACATGCAAGCCATATTCATATTTCTGTACTTTCAGAGACATTAATTCCTTAGCTCTCCTTAATAACCTCCGTCTGCAGTAAGAAATTATATTCAGTCCTagcttagtctatatccacgacgttccacttccgggattgctccgttgctgccggaaattccaccggatgtcactcttttcggccggatgtcagtttcctt

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
XR_005639467.1 lncRNA upstream 51496 21608823 ~ 21620711 (+) True LOC120560273
TU85279 lncRNA upstream 53605 21616223 ~ 21618602 (+) True G63641
TU85261 lncRNA upstream 185169 21486769 ~ 21487038 (+) True G63628
TU85260 lncRNA upstream 187541 21479780 ~ 21484666 (+) True G63627
TU85205 lncRNA upstream 324690 21346367 ~ 21347517 (+) True G63576
TU85373 lncRNA downstream 165768 21844832 ~ 21845138 (+) True G63714
TU85374 lncRNA downstream 196381 21875445 ~ 21875687 (+) True G63715
TU85491 lncRNA downstream 452820 22131884 ~ 22150124 (+) True G63792
TU85584 lncRNA downstream 1224971 22904035 ~ 22905966 (+) True G63872
TU85631 lncRNA downstream 1308117 22987181 ~ 22988040 (+) True G63914
XM_039802950.1 mRNA upstream 116 21661703 ~ 21672091 (+) True gkap1
XM_039802951.1 mRNA upstream 116 21661703 ~ 21672091 (+) False gkap1
XM_039804530.1 mRNA upstream 11464 21650457 ~ 21660743 (+) True LOC120561417
XM_039803506.1 mRNA downstream 13086 21692150 ~ 21751584 (+) True frmd3
XM_039803507.1 mRNA downstream 13086 21692150 ~ 21751584 (+) False frmd3
XM_039803508.1 mRNA downstream 13086 21692150 ~ 21751584 (+) False frmd3
XM_039803510.1 mRNA downstream 13086 21692150 ~ 21751584 (+) False frmd3
XM_039803516.1 mRNA downstream 72824 21751888 ~ 21762175 (+) False LOC120560723
XR_005639510.1 other upstream 73408 21588876 ~ 21598799 (+) False LOC120560787
TU85087 other upstream 994291 20676417 ~ 20677916 (+) True G63480
XR_005639482.1 other upstream 1183369 20477812 ~ 20488838 (+) False wdr31
XR_005639483.1 other upstream 1183369 20477812 ~ 20488838 (+) False wdr31
TU84360 other upstream 2223257 19434907 ~ 19448950 (+) False rasl10a
TU85622 other downstream 1250835 22929899 ~ 22930205 (+) True G63905
TU85875 other downstream 2013598 23692662 ~ 23693291 (+) True G64108
XR_005639471.1 other downstream 3144654 24823718 ~ 24834631 (+) False cdc14b
XR_005639472.1 other downstream 3144655 24823719 ~ 24834620 (+) False cdc14b
TU86491 other downstream 4005908 25684972 ~ 25696570 (+) False LOC120561182

Expression Profile