RNA id: TCONS_00074628


Basic Information

Item Value
RNA id TCONS_00074628
length 4300
RNA type mRNA
GC content 0.46
exon number 20
gene id XLOC_038049
representative False

Chromosome Information

Item Value
chromosome id NC_007120.7
NCBI id CM002893.2
chromosome length 56459846
location 39313944 ~ 39624173 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

CAAATATAATAGGAAGATGCGTAGCCGCGTTGTCACTTAGTCTAATCATATGGTGCTTCAATGCATGTGCTGACTCTTTCGGTTTCCTGGCGGGCACAGAGCGGGTGGCGTGGGATAGATGTGGATGTTTTGACAGTGGTTCATTGAGGCGTGAGAGGGAGGGTTCGACTCTTGGCTCAAAGGCAATGCCAGCTGATTCAACAGATGGCAAATGTCTTTGATTGGTGCAAGGTGTTTGATGAGCAGAAATGGCTCTGTTTAATTTCTTGTCAAGTTGTCCGTCTGGGGCCGGAGCCTCCTTGTCTCTCTTAGTGGAGCTTCAGGCCTGATTGAATTGCATTGCTGGATGATCTGAAGCGCCTAACAGTTCCTGCATCTGTTGTTTGCAGCATCAGAAtgtaatgtttgtgttttgttttcttctttttgcaGTATGCACTGGCACAGAAAATAAACTGAGCACTCTGTCAGATCTGGACCAGCAGTATCGGACCCTTCGTAAATACTATGAGAACTGTGAGGTGGTGATGGGGAATCTGGAGATCACCAGCATTGATCGCAGCCGTGACCTGTCTTTTCTTAGGTCCATTCGTGAGGTGACTGGCTATGTGCTCGTGGCACTGAATCAGTTTGAATATCTTCCCCTGGAGAATCTTCGCATCATCCGTGGCACCAGGCTGTATGAAGACCGATATGCTCTGGCAATCTTCCTCAACTACCGCAGAGACGGAAACTTTGGCCTCCGTCAGCTTGGCCTTAAGAACCTCACAGAAATCCTGAATGGAGGGGTGTATGTGGACCAGAACAAATTCCTGTGTCATGCTGATACCATCCACTGGCAGGACATAGTGAAGAATGCTCGCCCTGATCACCTGGTTGTGCCATCCAACAGCAGCAGCTCCTGTCAGAGGTGTCACAGAGCATGTAATGGACGCTGCTGGGGGCCTAAGGAAGACCAGTGTCAAAGCTtgACGAAGACGGTGTGCGCGGAGCAGTGTGATGGCCGCTGTTTTGGGCCGTACGTCAGTGACTGTTGCCATCCTGAATGTGCTGGAGGCTGTTCTGGACCAAAAAACACAGACTGCTTCGCTTGCACAAACTTCAACGACAGCGGCGCTTGTGTGACCCAATGCCCACGGCCCTTCGTCTACAACCCCACCACGTTCCAGCTGGAGCACAACCCATGGGCCAAATACACATACGGAGCATTCTGCGTCAAAAAGTGCCCACATAACTTTGTGGTGGACCACAGCTCCTGTGTCAGAGCCTGTCCCAGCAATAAGATGGAGGTGGAGGAGAACAGGATCAAGATGTGCATCCCCTGCACTGATATCTGCCCCAAAGCATGTGATGGGATCGGCACTGCCAGCCTTCAGACGGCGCAAACTGTCGACTCCAGCAACATCGACAGATTCATCAACTGCACAAAGATCAACGGAAACCTGGTGTTCCTCATCACAGGCATTAAAGGGGATGTTTACCACAACATAGAACCTCTGGATCCAGAGAAACTCAACGTGTTTCGCACTGTTCGAGAGATCACTGGTTTTCTGAACATTCAGTCTTGGCCTGAAAACATGACTGATCTGAGTGTCTTCTCCAATCTGGCAACTATTGGAGGCAGAGCTCTCTACAGTGGCATCTCTCTTCTAGTGCTGAAGCAACAGTGGATTACCTCAATGCAGCTGCAGTCTCTCAGAGAGATCAGTGCTGGAAATGTGTATGTCACCAACAACAGTCAACTCTGCTACTATAACACTGTCAACTGGACACGACTCTTCCGCATCAACACCCAGAAGGCCCTGATCCGCAACAACCGTGACCCCAAGGAATGCATTTTGGACCGAATGGTATGTGACCCGTTGTGCTCTGACGCTGGATGCTGGGGTCCGGGGCCTGACCAGTGCCTGTCCTGCCGCTTCTTCATCAGGGGACGCACCTGTGTCGAATCTTGCAACCTGCACGAAGGGGACGTGCGTGAGTTTGCTAATGGCTCGGTGTGTCTGGAGTGTGATGCACAGTGTGAAGTGCCGGAGGATGATGCTCTTACCTGCACTGGACCTGGTCCTGATCACTGTGTTAAATGTCGTCACTTTAAAGACGGACCCAACTGTGTGGAGAAATGCCCTGACGGTCTACAGGGAGCGAGCAGCTTCATCTTCAAATACGCTGAGGCCAACAATGAGTGTCACCCCTGCCATGTCAACTGCACCCAGGGATGCACAGGGCCCCGTCTGCAGGACTGCATCGGCGTGATGGACAGGACTCCCCTTATTGCGGCAGGGGTTATTGGAGGATTGTTTGTGGTGATCATCATAGGTCTTAGTGTTGCCATATCAGTGAGGAGGAAAAGCATCAAGAAGAAGAGAGCATTGAGGCGCTTCTTGGAGACCGAGTTGGTGGAGCCTTTGACCCCCAGCGGTGCAGCCCCAAATCAGGCCCAACTGCGCATTCTGAAAGAGACGGAGCTGAAACGGGTGAAGATCCTGGGAGCCGGAGCCTTTGGCACTGTCTACAAGGGCATCTGGGTTCCTGAGGGTGAGACTGTGAAGATTCCTGTTGCCATTAAGATCTTGAACGAAGCGACAGGCCCCAAAGCCAATGTGGAATTCATGGATGAGGCTCTGATCATGGCCAGCATGGAACATCCTCACCTGGTGCGGTTATTAGGTGTTTGTCTGAGTCCCACCATACAGCTGGTCACTCAGCTCATGCCCCACGGCTGTCTGCTGGACTACGTGCACGAACACAAAGACAACATCGGCTCCCAATTACTGCTCAACTGGTGTGTTCAGATCGCAAAGGGTATGATGTACTTGGAGGAGCGTAGACTCGTGCACAGGGACCTGGCTGCTCGAAACGTCCTAGTAAAGTCACCTAACCACATCAAGATCACTGACTTCGGTCTGGCTCGCCTTCTGGATGCAAACGAGAAGGAATACAATGCAGACGGAGGCAAGGTCAGTACAGCATGACCCTGACAAGACAAAGGGCACACACTTACCCTTTAGCATAACATCAGTTATTATTAATTTGAACACTGCTTGGAATAATTAAGACATATGTTGCAGTTTGTGTCTTTTGGTGGGCTAATTAACAGCATTTGCTatggccaaacacacacacactaccagaATATGGATTTTATTCGCAAGTATTTAAAGGTTCACAGGTTCTTAATGACCCTGTTGGTGCGAACATACATGACTTACAGACTAATCGGGACACTGCCCACATCTTATGAAAGGTCAATTTCATTCTATTTCAGAATTTATTGTTGTACTTGGCACTATTCTCAGCATGTCAGGAAGAAATGTGTGCTTTTCTTTTACTGAGTGATCAGATTTATGCCAGACTATACATTCAGTACACTGTGTATAATGTTTAATAGTGGACAGCCACCAACATCAAATCTGGGACGTCCAAAGACTAgcattattaagttttattttagtcAGTGCAAATGTATGACCAATAGGAAGACAGAAGCTTCCACCTACACATTTGTAAAGTAATGATGGGTCATGAGGTGACGTATAGTACACAATTAGTTTTTTGTTGGTGTCTGTAGTGCAGTAGCACAGTAATTAAGTAGTTAAAAACCTTATGATAATACATTGTTTAATGTAACGCAAGAAAAAAAATTAGACTGAATACAGCacagggctgcacgattaatcgtaaaaagatagcttgagaaacccgttctcaaagacttattttttggggtagcacacatattctgaatgccttcagcagaaATAAagtgagccattttaatctagattaattccaagattacagtgagattacaaactcctcacagaaatgccatctgagccgaggttcgaaccagcgaccttcttgcagtgaggcaacagcactacctactgcgccactacgtcgctatatatatatatatacataaatatatacacatttgaagtcagaattattaaccgccctgtttattattatttttttgccattttctgtttaacagaaagcagtttttttaacacatttctaaacataatagttttaataacatatctctaataactgttttatttgatctttgccctgataacattaaataacattttactagataatcttctagtcgaaataaaacaaataagacttcctccagacgaaaaaatattttcagacatactgtaatttccttgctctgttagacatcatttggaaaatatttaaaaaagaataaaattcaaaggggagctaatatatatatatatatatatatatatatatatatatatatatatatatatat

Function

GO:

id name namespace
GO:0033674 positive regulation of kinase activity biological_process
GO:0007275 multicellular organism development biological_process
GO:0006468 protein phosphorylation biological_process
GO:0008284 positive regulation of cell population proliferation biological_process
GO:0016310 phosphorylation biological_process
GO:0007169 transmembrane receptor protein tyrosine kinase signaling pathway biological_process
GO:0009925 basal plasma membrane cellular_component
GO:0005887 integral component of plasma membrane cellular_component
GO:0016020 membrane cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0043235 receptor complex cellular_component
GO:0016740 transferase activity molecular_function
GO:0005524 ATP binding molecular_function
GO:0005154 epidermal growth factor receptor binding molecular_function
GO:0000166 nucleotide binding molecular_function
GO:0004672 protein kinase activity molecular_function
GO:0016301 kinase activity molecular_function
GO:0004713 protein tyrosine kinase activity molecular_function
GO:0004714 transmembrane receptor protein tyrosine kinase activity molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-030918-5 Predicted to enable epidermal growth factor receptor binding activity and transmembrane receptor protein tyrosine kinase activity. Predicted to be involved in positive regulation of cell population proliferation; positive regulation of kinase activity; and transmembrane receptor protein tyrosine kinase signaling pathway. Predicted to act upstream of or within protein phosphorylation. Predicted to be located in membrane. Predicted to be integral component of membrane. Predicted to be part of receptor complex. Predicted to be active in basal plasma membrane. Predicted to be integral component of plasma membrane. Is expressed in heart; muscle; nervous system; and trunk. Human ortholog(s) of this gene implicated in amyotrophic lateral sclerosis type 19; colorectal cancer; esophagus squamous cell carcinoma; hepatocellular carcinoma; and lung adenocarcinoma. Orthologous to human ERBB4 (erb-b2 receptor tyrosine kinase 4).

Ensembl:

ensembl_id ENSDART00000180106

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00075431 lncRNA downstream 31671 39230526 ~ 39282273 (-) True XLOC_038048
TCONS_00075430 lncRNA downstream 604723 38708463 ~ 38709221 (-) True XLOC_038046
TCONS_00075429 lncRNA downstream 753681 38558639 ~ 38560263 (-) True XLOC_038044
TCONS_00075428 lncRNA downstream 754194 38558639 ~ 38559750 (-) False XLOC_038044
TCONS_00075427 lncRNA downstream 961059 38351581 ~ 38352885 (-) True XLOC_038040
TCONS_00075432 lncRNA upstream 286523 39910696 ~ 39915313 (-) False XLOC_038050
TCONS_00075009 lncRNA upstream 288002 39912175 ~ 39915291 (-) False XLOC_038050
TCONS_00075010 lncRNA upstream 288002 39912175 ~ 39939616 (-) True XLOC_038050
TCONS_00075433 lncRNA upstream 364802 39988975 ~ 40014878 (-) False XLOC_038051
TCONS_00075434 lncRNA upstream 370587 39994760 ~ 40014802 (-) True XLOC_038051
TCONS_00074626 mRNA downstream 308627 38994232 ~ 39005317 (-) True XLOC_038047
TCONS_00074624 mRNA downstream 726669 38564900 ~ 38587275 (-) False XLOC_038045
TCONS_00074625 mRNA downstream 734186 38565039 ~ 38579758 (-) True XLOC_038045
TCONS_00074622 mRNA downstream 914512 38389842 ~ 38399432 (-) True XLOC_038042
TCONS_00074621 mRNA downstream 915155 38385561 ~ 38398789 (-) False XLOC_038042
TCONS_00074631 mRNA upstream 335945 39960118 ~ 39968820 (-) False XLOC_038051
TCONS_00074632 mRNA upstream 336226 39960399 ~ 40011673 (-) False XLOC_038051
TCONS_00074633 mRNA upstream 336226 39960399 ~ 40014339 (-) False XLOC_038051
TCONS_00074634 mRNA upstream 336226 39960399 ~ 40017179 (-) False XLOC_038051
TCONS_00074635 mRNA upstream 336226 39960399 ~ 40073255 (-) False XLOC_038051
TCONS_00074627 other downstream 58734 39230526 ~ 39255210 (-) False XLOC_038048
TCONS_00074623 other downstream 844378 38469446 ~ 38469566 (-) True XLOC_038043
TCONS_00074619 other downstream 1109416 38204407 ~ 38204528 (-) True XLOC_038039
TCONS_00074610 other downstream 1564025 37636957 ~ 37749919 (-) False XLOC_038033
TCONS_00074611 other downstream 1564025 37747587 ~ 37749919 (-) True XLOC_038033
TCONS_00074636 other upstream 457351 40081524 ~ 40350169 (-) True XLOC_038052
TCONS_00074637 other upstream 760957 40385130 ~ 40385247 (-) True XLOC_038053
TCONS_00074639 other upstream 885356 40509529 ~ 40509643 (-) True XLOC_038055
TCONS_00074649 other upstream 1318946 40943119 ~ 40953573 (-) False XLOC_038063
TCONS_00074657 other upstream 1448647 41072820 ~ 41072935 (-) True XLOC_038066

Expression Profile

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