RNA id: TCONS_00075009


Basic Information

Item Value
RNA id TCONS_00075009
length 491
lncRNA type inter_gene
GC content 0.44
exon number 2
gene id XLOC_038050
representative False

Chromosome Information

Item Value
chromosome id NC_007120.7
NCBI id CM002893.2
chromosome length 56459846
location 39910696 ~ 39939616 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

CTTCAGCTTTTTGCCGTTGCAGCTCTGAAGAGCGTCTGAAGAGAGTAATGGCATGAGCTTTGCGTCGAGATCCTGTCAAAGCACCAAACAGCGAATTTGTCGCGCCTGAACTTTTCCACTCTTTCCTGAGgactattttacaatttaaagggGACATCTTATTACCTTTTTTTCCACTGTCACACCAGAGCAGCACTTGAAGTCACTCCACCGCAGTTGCGCTCCTGtcttaagacattttaaataaaaggaTATGGTGTTGGACATGTGAAATTCACGGGGAAACTTCAAACATGAAGCTGGCATCTTCTCTGTGTTGCCTCGGGTTTCTTCTCACTTCTGTGGCGGTCCGTCTGAGCGACTCGCAGCAAGATCTTCTTCGTGGATGGATCCCGTTATTATGGAGCTGTGGAACAAGCATGAGAAGTGATACAATGTATGCTTTttgtctgtatatatttttaagattacGTGGGAGGTGATTTAAATTG

Function

GO:

id name namespace
GO:0031226 intrinsic component of plasma membrane cellular_component
GO:0044459 obsolete plasma membrane part cellular_component
GO:0005887 integral component of plasma membrane cellular_component

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00075431 lncRNA downstream 629902 39230526 ~ 39282273 (-) True XLOC_038048
TCONS_00075430 lncRNA downstream 1202954 38708463 ~ 38709221 (-) True XLOC_038046
TCONS_00075429 lncRNA downstream 1351912 38558639 ~ 38560263 (-) True XLOC_038044
TCONS_00075428 lncRNA downstream 1352425 38558639 ~ 38559750 (-) False XLOC_038044
TCONS_00075427 lncRNA downstream 1559290 38351581 ~ 38352885 (-) True XLOC_038040
TCONS_00075433 lncRNA upstream 73684 39988975 ~ 40014878 (-) False XLOC_038051
TCONS_00075434 lncRNA upstream 79469 39994760 ~ 40014802 (-) True XLOC_038051
TCONS_00075435 lncRNA upstream 165599 40080890 ~ 40312566 (-) False XLOC_038052
TCONS_00075436 lncRNA upstream 166233 40081524 ~ 40098589 (-) False XLOC_038052
TCONS_00075437 lncRNA upstream 473289 40388580 ~ 40390704 (-) False XLOC_038054
TCONS_00074628 mRNA downstream 288002 39313944 ~ 39624173 (-) False XLOC_038049
TCONS_00074629 mRNA downstream 288002 39323127 ~ 39624173 (-) False XLOC_038049
TCONS_00074630 mRNA downstream 364268 39370681 ~ 39547907 (-) True XLOC_038049
TCONS_00074626 mRNA downstream 906858 38994232 ~ 39005317 (-) True XLOC_038047
TCONS_00074624 mRNA downstream 1324900 38564900 ~ 38587275 (-) False XLOC_038045
TCONS_00074631 mRNA upstream 44827 39960118 ~ 39968820 (-) False XLOC_038051
TCONS_00074632 mRNA upstream 45108 39960399 ~ 40011673 (-) False XLOC_038051
TCONS_00074633 mRNA upstream 45108 39960399 ~ 40014339 (-) False XLOC_038051
TCONS_00074634 mRNA upstream 45108 39960399 ~ 40017179 (-) False XLOC_038051
TCONS_00074635 mRNA upstream 45108 39960399 ~ 40073255 (-) False XLOC_038051
TCONS_00074627 other downstream 656965 39230526 ~ 39255210 (-) False XLOC_038048
TCONS_00074623 other downstream 1442609 38469446 ~ 38469566 (-) True XLOC_038043
TCONS_00074619 other downstream 1707647 38204407 ~ 38204528 (-) True XLOC_038039
TCONS_00074610 other downstream 2162256 37636957 ~ 37749919 (-) False XLOC_038033
TCONS_00074636 other upstream 166233 40081524 ~ 40350169 (-) True XLOC_038052
TCONS_00074637 other upstream 469839 40385130 ~ 40385247 (-) True XLOC_038053
TCONS_00074639 other upstream 594238 40509529 ~ 40509643 (-) True XLOC_038055
TCONS_00074649 other upstream 1027828 40943119 ~ 40953573 (-) False XLOC_038063
TCONS_00074657 other upstream 1157529 41072820 ~ 41072935 (-) True XLOC_038066

Expression Profile

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