RNA id: TCONS_00074624


Basic Information

Item Value
RNA id TCONS_00074624
length 2019
RNA type mRNA
GC content 0.51
exon number 7
gene id XLOC_038045
representative False

Chromosome Information

Item Value
chromosome id NC_007120.7
NCBI id CM002893.2
chromosome length 56459846
location 38564900 ~ 38587275 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

TCTCTATGTATTGTGAATCGTGCTTTGATAAATGTAAGTTCCTGGGCGGATCCGCTCTCACTCACATCTGGATTAAAAACATCTGGATCCGCCTACACGGAACTCAGTTacacgcagagagagagagagagagacccgaACTCTCTCACAGATGAGGCTGGTTTATCTGAGTCTTTGACACGAGCAGATAAAGAAAATAAGGGCATCGCTTCAGTAGTGTGGATCTTCGGAGGACTGTGTGATATTATGGGTCTGTGGACTCGAACATCTGCTCTTCTGTGCTGCTTCTGTCttCTGCAGGTGCAGAGTTTAAGCCCCATAAAGACCAACCTGTGTAAGTGGTGTGATCACTCCAGTCCTGTGTGTGAAGACAACGTCTGCATGAGCAACTGCAGTCTGACCTCTTACTGCTTTCTGGCTGAAGAAGTGTGTGTAGCCATATGGAAGAAGGACAATGTGAGCGTGAGTGTGCGGACGCTGTGTTATGACCCCCAGCATATGCTGGAGAACATAATGCTGGCGAATTACTCGTCCAAGGAGTGTCTGATGAGCCCTCATCCATCTGAAGATGGCCTGCTCTTCATCTGCAGTTGTGTTGGAGATCAGGAGTGTAACGACAGGCTCATCTTTGATAAAGGACCCAATGGATTCTCAAAGCTGAAGTCTAAAGACGTGATTCCAGTCGTGGTCATAAGCCTGGTTCCTCCCCTCTTAGTAGCGGTCATTGCGACCATGGCTTTTTACCTGTATCGCACACGTCAGCCAGGCAAAAAGCCCAAGGAATGGGGACCACGACGGACCCACTACCAGTCTCTTGATCCTGCCGAGGGCCAAGCTAATGGCATCGACTTTAGTGCCAAGCGGCCATCCCTCAGCGATGACATCAATTCAGAAATGTCATCGACTTGTGCCAATAATCTAAACCACAACACGGAGCAGCTGCCCATCCAGCTGGAGGCGCTGGTGGGTAAAGGGCGCTTCGCGGAGGTATGGCGGGCACGACTTAGTCATAATGAAAGCGGGCAGTATGAAACGGTGGCTGTGAAGATTTTTCCAGCAGTGGAGTATTCATCGTGGTGTAACGAAAGAGCCATATTCTCTGATGCCAACTTGAAACATGAGAACGTGGTGCAGTTTCTGACGGCTGAGGAGCGGGGCGGTACGTCTGCCACCTCCCAGAGGCAATACTGGCTCATCATGGCTTATTATAACATGGGCAACCTTCAAGACTTTCTGGTTGGGAATATTCTGACATGGGCAGAGTTGTGTTCACTAGCAGGCTCTGTGGCAAGAGGACTGGCGCACCTGCACAGTGACACGACGCCATGTGGCATACAAAAAGTGCCCATCGCCCATCGAGATCTGAAGAGCAGCAACATTGTGTTGAAGAACCAAAGCGAATGCGTGCTCTGTGATTTCGGCCTGGCTCTGCGACTTGACCTGTCTCTCACTGTAGATGATTTCGCCAACAGTGGACAGGTGGGAACTGCCCGCTATATGGCCCCAGAAGTTCTGGAGTCCAGGGTGAATCTCGAGGACCTGGAGTCCTTTAAACAGATTGATATCTACTCCATGGCTCTAGTGATGTGGGAAATGGTCTCTAGGTGTGACGTCATAGGAGAGGTAAAGAGTTACGAACCTCCATTTGGCTCCAAAGTGTGTGAGCAGCCGTGTGTGGACAGCATGAGAGACCTGGTGTTGAGAGACCGAGGAAGACCAGATATTCCAGACAGCTGGACCACACATTCAGGCATGCAGTTGTTGTGCGCGACTATAACGGAGTGCTGGGATCACGACCCGGAGGCTCGACTGACGGCTCACTGCGTGGTGGAGCGCTTTAACACTCTGGCTCAGGAAGAGCTGGAGAACTCCATCTGCACCCACACACCCTCAACACCACCTACAGAAGACCAAACCCCGACCCTGCCCTCTCACCCACCCTGCACAGACCACAGCGCTGACATCTGTCCGCACGTCACAGCTGACATCGTTTCCTCCAGGCAACATAGTCAAGTTTAA

Function

GO: NA

KEGG: NA

Ensembl:

ensembl_id ENSDART00000077446

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00075429 lncRNA downstream 4637 38558639 ~ 38560263 (-) True XLOC_038044
TCONS_00075428 lncRNA downstream 5150 38558639 ~ 38559750 (-) False XLOC_038044
TCONS_00075427 lncRNA downstream 212015 38351581 ~ 38352885 (-) True XLOC_038040
TCONS_00075008 lncRNA downstream 492984 38070084 ~ 38071916 (-) True XLOC_038037
TCONS_00074612 lncRNA downstream 744688 37817266 ~ 37820212 (-) True XLOC_038034
TCONS_00075430 lncRNA upstream 121188 38708463 ~ 38709221 (-) True XLOC_038046
TCONS_00075431 lncRNA upstream 643251 39230526 ~ 39282273 (-) True XLOC_038048
TCONS_00075432 lncRNA upstream 1323421 39910696 ~ 39915313 (-) False XLOC_038050
TCONS_00075009 lncRNA upstream 1324900 39912175 ~ 39915291 (-) False XLOC_038050
TCONS_00075010 lncRNA upstream 1324900 39912175 ~ 39939616 (-) True XLOC_038050
TCONS_00074622 mRNA downstream 165468 38389842 ~ 38399432 (-) True XLOC_038042
TCONS_00074621 mRNA downstream 166111 38385561 ~ 38398789 (-) False XLOC_038042
TCONS_00074620 mRNA downstream 196762 38353452 ~ 38368138 (-) True XLOC_038041
TCONS_00074618 mRNA downstream 408006 38140911 ~ 38156894 (-) True XLOC_038038
TCONS_00074615 mRNA downstream 521961 38029475 ~ 38042939 (-) False XLOC_038036
TCONS_00074626 mRNA upstream 406957 38994232 ~ 39005317 (-) True XLOC_038047
TCONS_00074628 mRNA upstream 726669 39313944 ~ 39624173 (-) False XLOC_038049
TCONS_00074629 mRNA upstream 735852 39323127 ~ 39624173 (-) False XLOC_038049
TCONS_00074630 mRNA upstream 783406 39370681 ~ 39547907 (-) True XLOC_038049
TCONS_00074631 mRNA upstream 1372843 39960118 ~ 39968820 (-) False XLOC_038051
TCONS_00074623 other downstream 95334 38469446 ~ 38469566 (-) True XLOC_038043
TCONS_00074619 other downstream 360372 38204407 ~ 38204528 (-) True XLOC_038039
TCONS_00074610 other downstream 814981 37636957 ~ 37749919 (-) False XLOC_038033
TCONS_00074611 other downstream 814981 37747587 ~ 37749919 (-) True XLOC_038033
TCONS_00074599 other downstream 1782235 36782547 ~ 36782665 (-) True XLOC_038026
TCONS_00074627 other upstream 643251 39230526 ~ 39255210 (-) False XLOC_038048
TCONS_00074636 other upstream 1494249 40081524 ~ 40350169 (-) True XLOC_038052
TCONS_00074637 other upstream 1797855 40385130 ~ 40385247 (-) True XLOC_038053
TCONS_00074639 other upstream 1922254 40509529 ~ 40509643 (-) True XLOC_038055
TCONS_00074649 other upstream 2355844 40943119 ~ 40953573 (-) False XLOC_038063

Expression Profile

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Homologous

species RNA id representative length rna type GC content exon number chromosome id location
grasscarp (Ctenopharyngodon idella) CI01000009_10414678_10421940.mRNA True 2384 mRNA 0.47 6 CI01000009 10413808 ~ 10421940 (-)