RNA id: TCONS_00074618


Basic Information

Item Value
RNA id TCONS_00074618
length 1542
RNA type mRNA
GC content 0.46
exon number 14
gene id XLOC_038038
representative True

Chromosome Information

Item Value
chromosome id NC_007120.7
NCBI id CM002893.2
chromosome length 56459846
location 38140911 ~ 38156894 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

CTGACATGGCaactaaaatcatttattttactgtgaatgGAAGACCAGAACAAGCTGAGTTTCCCATCGACTGTCCTGCACAAGATGTTAAAGATCTTTTCCGAGCTGCAGCTGAGGCCGGACCTCATGACATCTTAAAACTGTACAATACTAAAGGCAATATCATTAATATTTCCCCTCAGCTGGCCTCCAACAGCCCTCACTCCTACTATAAGCTGGAGGTAGTCGCTGCAGACTGCAACAGTGAGCTGTTAGGCTCCGAGCTGGCAGTTGCTTTGGGATTTGACCTCACTTCTATGGAGAAAAGGTTACAGAGTCTGGAGAAAAGAATCTTGACAGAAGCAGCGGAGACTCCTGCTATTGTGTATGAGATGAAGAGACAGGTGGAGTCTTTCAGAGAGAAACTGGAGAGCGTGGAGCACCTGAGCTGGCTGGGTTTGTTTAAGGACATGTCAGAAGGAACCCACAAACCCTCTCCTTTTTACCACAAAAGAACGTTGCGGAAAACCCGGGAGGAGTGTGAGCATGTCAGAGAAAAGTTTCTCCAAATGAGTTCTCTGGAAGTTTCAGAAGAGGTGAGACAGTATCTTAAAACACCAACTTTTGATAACTGGCAATGGGAGGACGCGGAGATAATGGTGTTGCTCCAGGTGATGTACACAGATCTGGACTTCATCTCCACGTTCAACATCGAGCCGGATGTGCTGCAGCAGTTTCTTTATGAAGTGTACAGACGCTACAACAACATCCCCTTCCACAACTTCAAGCATTGCTTCTGCGTCACCCAGATGATGTATGGGCTCATATGGCTAACAGATCTCAGAAGCAAGATTGACAGCATTGATCTCCTCATCATGTTGACCTCGGCTGTCTGTCACGATTTAGATCACACTGGATACAACAACGCCTACCAGATTAATGCACGAACTGAACTTGCTCTAAGATACAATGACATCTCCCCACTGGAAAATCACCACTGCGCTGTAGCCTTTGAAATCCTGGAAAAGactgaaagcAACATTTTCCGAAACTTGCCGACAGAGCAATACAAAAGAATAAGAGAGGGCATAATTAAGTGTATTCTTGCTACTGATATGTCCAGACATACAGACATCCTCAACAAGTTTAAAGCCATTTTACCTGTGTTTGACTTTGGCAACAAGGATCACAGAGATGTGTTGATGATGATCATGATTAAAGTCAGTGATATCTCCAACGAGGCCAGACCCATGGATGTGGCCGAGCCGTGGCTGGACTGTCTGCTGCAAGAGTTCTTCAACCAGagTGATATGGAGAAGTTGGAGGGCCTTCCTGTCACCCCATTTATGGATCGAGACAAAGTGACCAAACCTTCTTCTCAGACGGGATTCATCCGCTTCGTTCTCTTCCCTCTCTTCATCGAACTGGCCAATCTGTTTCCCTGTCTGGAGCAACACATTATCGATCCAGTGCGGAAAGCCCTGGATTATTACACAGAGATGGAGAAAGCGCTTGAGAGAGAGAAGCAAAACCGAGCTCTGAACGAGACGACGGTCAAAACCA

Function

GO:

id name namespace
GO:0046069 cGMP catabolic process biological_process
GO:0019934 cGMP-mediated signaling biological_process
GO:0007165 signal transduction biological_process
GO:0046872 metal ion binding molecular_function
GO:0016787 hydrolase activity molecular_function
GO:0004114 3',5'-cyclic-nucleotide phosphodiesterase activity molecular_function
GO:0047555 3',5'-cyclic-GMP phosphodiesterase activity molecular_function
GO:0008081 phosphoric diester hydrolase activity molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-081105-151 Predicted to enable 3',5'-cyclic-GMP phosphodiesterase activity. Predicted to be involved in cGMP catabolic process and cGMP-mediated signaling. Is expressed in brain.

Ensembl:

ensembl_id ENSDART00000134759

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00075008 lncRNA downstream 68995 38070084 ~ 38071916 (-) True XLOC_038037
TCONS_00074612 lncRNA downstream 320699 37817266 ~ 37820212 (-) True XLOC_038034
TCONS_00075426 lncRNA downstream 1003655 37118184 ~ 37137256 (-) True XLOC_038031
TCONS_00075007 lncRNA downstream 1120440 37015729 ~ 37020471 (-) True XLOC_038030
TCONS_00075425 lncRNA downstream 1181250 36956993 ~ 36959661 (-) True XLOC_038029
TCONS_00075427 lncRNA upstream 194687 38351581 ~ 38352885 (-) True XLOC_038040
TCONS_00075428 lncRNA upstream 401745 38558639 ~ 38559750 (-) False XLOC_038044
TCONS_00075429 lncRNA upstream 401745 38558639 ~ 38560263 (-) True XLOC_038044
TCONS_00075430 lncRNA upstream 551569 38708463 ~ 38709221 (-) True XLOC_038046
TCONS_00075431 lncRNA upstream 1073632 39230526 ~ 39282273 (-) True XLOC_038048
TCONS_00074615 mRNA downstream 97972 38029475 ~ 38042939 (-) False XLOC_038036
TCONS_00074617 mRNA downstream 98088 38032934 ~ 38042823 (-) True XLOC_038036
TCONS_00074616 mRNA downstream 103927 38030564 ~ 38036984 (-) False XLOC_038036
TCONS_00074613 mRNA downstream 118914 37872577 ~ 38021997 (-) False XLOC_038035
TCONS_00074614 mRNA downstream 119022 37872722 ~ 38021889 (-) True XLOC_038035
TCONS_00074620 mRNA upstream 196558 38353452 ~ 38368138 (-) True XLOC_038041
TCONS_00074621 mRNA upstream 228667 38385561 ~ 38398789 (-) False XLOC_038042
TCONS_00074622 mRNA upstream 232948 38389842 ~ 38399432 (-) True XLOC_038042
TCONS_00074624 mRNA upstream 408006 38564900 ~ 38587275 (-) False XLOC_038045
TCONS_00074625 mRNA upstream 408145 38565039 ~ 38579758 (-) True XLOC_038045
TCONS_00074610 other downstream 390992 37636957 ~ 37749919 (-) False XLOC_038033
TCONS_00074611 other downstream 390992 37747587 ~ 37749919 (-) True XLOC_038033
TCONS_00074599 other downstream 1358246 36782547 ~ 36782665 (-) True XLOC_038026
TCONS_00074598 other downstream 1370248 36770357 ~ 36770663 (-) True XLOC_038025
TCONS_00074597 other downstream 1374883 36765623 ~ 36766028 (-) True XLOC_038024
TCONS_00074619 other upstream 47513 38204407 ~ 38204528 (-) True XLOC_038039
TCONS_00074623 other upstream 312552 38469446 ~ 38469566 (-) True XLOC_038043
TCONS_00074627 other upstream 1073632 39230526 ~ 39255210 (-) False XLOC_038048
TCONS_00074636 other upstream 1924630 40081524 ~ 40350169 (-) True XLOC_038052
TCONS_00074637 other upstream 2228236 40385130 ~ 40385247 (-) True XLOC_038053

Expression Profile

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Homologous

species RNA id representative length rna type GC content exon number chromosome id location
grasscarp (Ctenopharyngodon idella) CI01000009_05402729_05410456.mRNA True 1398 mRNA 0.44 10 CI01000009 5402504 ~ 5410456 (-)
bowfin (Amia calva) AMCG00000853 True 1644 mRNA 0.49 14 CM030137.1 5450060 ~ 5460804 (-)