RNA id: XR_005639579.1


Basic Information

Item Value
RNA id XR_005639579.1
length 5432
RNA type transcript
GC content 0.50
exon number 12
gene id cmya5
representative False

Chromosome Information

Item Value
chromosome id NC_053117.1
NCBI id CM020914.1
chromosome length 43979800
location 17998686 ~ 18011030 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

AAGATCATTTTCCCATATCTATAACAATCTTTTCATGATAAGTTCAACTTCTAACTTCTAACTACTTCTTGGGTTAAGTGCACTAACAACAAACTCTAAGACCCAGTGAGACCTACcttttctctgctctcttcTCTAGCTCCACTCCCCTCCACCTTAATTCCCCACTGTGTTTATTTCTGTCTCTGGCTGAGTCAGATGGACTGCTCCCAACTTAGAATGACACAAACAGGCAGACCAACTCTTCTGAAATCACAGTGGCTGAAAACATCAAGAGGACTCTAAAATCCACAGAAAAACAACATTGGAGACTGCAAAGGGGAGAGCTGGAAGTTATTACCAAGATGGAGGAGTGTGAGAGTCTGGACTCTGAGATGACGGAGCTGCAGGAGTTTCAGAGTGAGGCTTCAGAGGCCATCAGCCAGGACGATGAAGACGAGGTGGAGGAACTGCAAAACAGTCTGCGAGAGGTTGTCCAGGACCAGTCCGTGAAGCCCAAATTCCAGTGCCTGATGGTGGATCCGTCATTCTCTATGGTAACTGTTCAGAGTGAGGACAGTGGTATTGTTTGGGAGACGGCCTCTAGCCGCTGCTCTACTCCCTGGGCCTCTGAGACCAGCTCCATCTCTGAAGCCTACAGCATGGAGGGCTCTGGAGCCGCAGGAAAGATCACCATCGTCTTTGATGAGGAGAAAATAGTCCGCAGGAGGACGAGGTCTGGAGGAAGGAGCAGCAGGCTGGGGGACAGGCTGAGCCGACCTGGTAGTTCAAGATCGGCTTCAGCCCTTGGAGTGGAGAGACCGGAGATGGCAGAGGTTTCCCTCCCCAATGTTAAACAGGAGAAAACCGAAACAGAGCCAGACTTGGAGGAAATCAAAAATAAAGATCAGCAGCTGTTTAGTTTGATTTCAGAGGGTTATGAGATTCTCAACATCAGAGTCCCCTCCAAACTTCCCACTGTGGATGAGGAAGAGAGCACAGAGTTGCAAGACAATTTGTCTTATTTGGATGAGACTCCAAAGATCAGGTCCCGAAACCACCATGACTGGACACTGCAACAGAACCATACCCTGCCAGAGGAGGGGGAAATGATGCATCACCAAGAgCCCTTAAAGCAAGACTCTGCGGACACAgagctcagacacacacacactcagaaggAGAGCACCGGCGACATAGACTACTTTGAGAAGTTTACCCTGGTTGATGTGGTGACTCCTGGAGAAGAAGCTCCAGAGCTTCAGGAGGAGGCAGAACAGCGTGCAGCGAAGCCCCAAGTGGAGGAGCAAAAGCCGGCtaaggagacagacacagacagcccGTCTGCATCAGAGGACTCCTTTGTCTTTGTTACAGATGTGGAGATAGTTGGGGAACGCTTGGATGAGGTCTTCTACGGAGAAGGAGCTCCTGCTGAGGCACTGCCGAGGAGAGAAGACAATGAGGCGGAGAGTGCAATGAGAAGGAGACGAGAGAGCCAGAGATCTGGGAAGGAGAATGGCTCAGCGTTGTTTGGGAGTGAAGAGACCACCCTCACGCCCATTTATATCTCCTCTGGACCCCCTAAGATCATTGACCTCATCCTGCTGGAAGAGCCCACTGCCATGTCCTTTATGTATTCAGACCTTTACGAAGATGCTGTAGGCGAGAGGACGAAGAGCGACGGGGAACACTCCGAGGCAGAGAGCGTGGCATCTGAGAAGACCTATAGGAGACGTTTGTCAGATTCAGAGGAGGCTGACGGGTACCTGGAGAAGTTTATTTTGAAGGATGAAACTCCCACAGTGGAGGATCAACCAGAATCAGTAGAGGataagagggaggggaggatgaTGTGGTCGCAGTCTGAGTTTGACACAACAGGATGTCTAACAAGAGTGGACAGAGAAGAAGACAAGgacaagacaaagacagaggaaacaACGACTCAGGAAGTCAGTGTTGGAGATAACAGCGACGATTTACAATCAGCAACATTTGAAGAGAAAAGAGTAATAAttacagagacagaaaaggagagggaggaaaTACAACTTTCCATGGGGACTGAAGAGCAGACTGTCAGAGAAGCCTCGGAAGAATCAGTTCTTGAGTCTAAACTGGAAGAGGATCAGGTGGAGGATCTGGAGGTGACACATGAGGTAAAGAGAGACCAGACCGAGCCTCCTGAGAGCAGCACTGATGAACCACTTCCGGAAACTCATCAGGTGGACAGTAAAGTAGAGAAAACAGAGCAGAGTGAGGAACATCAGAGAGAAGTGCCAGCAGAAACAACTAGCATGATTAAAACTGAGCAGCCATGTCAGAGACAAAAAGTGGTAGAAAAAACAGCTCAGGTGGCTGTAAATGCTGCAGAGGAGACAGCTGTGATAACACCTGTAAGTACCGAGGCGCCTCCCATCATCACTGAGAAGAGTTTCTCTAAGGAGGCAGCTGCTGACACTGAGATGGTGGCTTTTGATGAGAAAGTAGTTACTGAGGCCATAGCAAAGGCCCCGGCTGAAGCTAAAGATCTTGAGACTGAAAGACAGGAAATTGTTACCTCTACTGAACCAGCGGAAACAACTAGCATTATTGAAACTGAGCAACCATGTCAGACACAAAAAGTGGTAGAAAAAAATGCTCAGGTGGTTGTAAATGCTGCAGAGGAGACAGCTGTGAGAACGCCTGTAAGCAGCGACGCGCCTCCCATCATCATTGAGAAGACTTTCTCTAAGGAGACAGCTGCTGACACTGAGATGGTGGCTGCTGATGAGAAAGTAGTTACCGAGGCCATAGCAAAGGCCCCGGCTGAAGTGAAAGAACCTGAGACTGATAGACAGGAAATGCTCACCTCTACTGAAATAGAGTCATCTGCCGAAACATCACTAAAAGAAGCAGTGGAAGTTGTTCCTGAAGATGTTGCACCTGTTGAGGTCACCACTGACTGTGATTCTGCAGTACAGGCATTAGTGGAGGTCACTGAAAAAGCCGCGGATGAAAAAGAGATCCAAACTCAAGTTCAGATTGATCTTCGGGAAGTTACAAGTGTTGAAACAACGGATGTTCACACAGctgaaggagaggaggaacatGAGGCTCTGGCAGAGGAAAGTACAGTTGAGAGCCAGCCGTCTGAATTTATTACTGAAGCTGATCAGGAGTCAGAGGTTAAAGCTGGGATCTCAAATGAAGTAACTGAACCGGTGTTGCCAGAAGAagtgaagacagattcagataAGAAACAGCTTGAAATTCTTGAATCGAAGCAGCATCAAAAAGAGGAGTCAGTAACTGACAATGAGCTAATAACTGAAGCCAAAGATAAAACCCCCACAGAGGACACTGGTGCTCAGGGGATGGTGAATGTGGGTGATGAGTTCATCCTCCTTGTCTCCAAAGGACAAGCTGTAGAGATGGACATAGCGATCAGTCAGTCGTCAGAGAAGACTAGAGGTGATACAGTAGCTCTCTCTGAACCTGACAGCACATGTGAACATCTCATAGCACCTGAAACCACCACAATATGCCCAGACACTCTTCAGGCCCCAAATGTAGAAACAATGACAGAGCCTCAACTGGAAGTAAAACCTGacattgttttaaatgaagaCGCACTACCCAGAAACGAGTTAGACAGGAGGTACTCTCCTCCAGCTCCTGTGGAGGAGGCCAACACAGAGGAGCAGAGGATGGACTGGGACTTTGAAGAAGACGAGGGCAACCTTTCCCCTCTGAGGAGCTCTACTCCCCAGGAGGATTTGTCCGGGCTACAAAGAGAGAATACAAAGTCAGGAACAGCAGATGTAGAACAAAAGGCAGACATTCACAAGGTGGAAGATGCCCCAGAAACAAGCATTGTTACAGAGGATTCCAGTCCAGAGATTGATCTGCAAAGAGAAGATGTAGAAGAAAAGATAGAGCAAGATGAGGCAGTTGCAGAGGCTCCAGAGGTGATTGCTGAGGAGCTTGAATATGAGATAATATCTAAACAAGATGCAAAAGATATGCCAGAACCTGAAACACAAAGAGATGCAGAGGAACCAAAACCTGAGTTTGGTCAGCCGAGAGAAGAGAGGATGGAGGTGGAGACGGAGGAGAAAGTCTTGGATCTGCCCCCAGAAGAAGAGCTCATTGAGGCTGACTATGAAATCATCGATGCAGAGGAGCAGAGTCAGGCCCGACTGGCTGCTGAGCTGCAGGGGATGGACTGGTTCTGTATCACCTGTGGATGTCTGCTGTCCGAGGATGACTATGTGTCTGGAGAGCATCACGGCCACGAAGTTGCTGCTGTGGACCAAGCCTACGAGGAAATCAAGGAGAAGCTGAGTGACTGGATCTCAGAACTTCAGGGGAGGTCAGAGAACATCGAGGACCTGGTGTCTGAGCTTGAACTGGCTTACAACTCTGTAGAGGACCAGTGTGTGGAGAGCGAGGCAGCGATGCGGGTGCAGAATGAGGAGATGATGGCTCTGGTGATGGAGCAGTACAACGACATGTCTGTCAGCatggaagaggagaagaaggcCAAGCTGGAGCAGCTATATGACCAGATTGTCTCCTTCCAGGAGAGCATCGACTCCACCAAAGCCACTCTGGAGACCACGGCCAGAGAGGCTGACACTGACGCACGGTCACCTGAAGACATTCATGCAAGTCTCAAGGCAGCTCTGGACTCAGCCATGTCACTGGAGCTGGGTCCCAAGGGACTGCTGGTGTTCGAGGACTATGCCAAGGGCAACACTTCCAGCTCTCACCTCGCACAGCGTAAGGGAATCCCAGTTCCTCAGAGACCTACGCTGCAGCCTCAGGAGTCAGGCTCAGCCACCAGCACTAGTGTCACCGTTTACTGGAGGGTCAACCCTGGAGATATCATAGACTGCTTCCAGGTCTACTGCATGGAGGATCCACAAGGAGCTGTGTCAGAGGAGTACCGTGTGACAGTGAAGGAGAGTTATTGTGTCCTGGAGGAGCTGGAGCCTGACAGGACATACAAGGTGTGGGTGATGGCTGTCAACTATACAGGCTGCTCTCTGCCCAGCGAGAGACTCTCCTTCAGAACTGCTCCATCAGTGCCAGTGATTGACACCGAGTGCTGTACTGTCATGTGGGATTCAGCCACGCTGCGGTGGAGCTCAGCAAGTCAGACTCCCGAACACAGTTACACGCTGGAGTACTGTCGCCAGTATGAACTGGAGGGAGAGGGGCTCAGGCATCAAAAGCTGTGAACAGAGGGTTCTCCTGCAGCCCAATGAGAATTATCTGTTTTACATCAAAGCTGTGAACGAGTCTGGAGCCAGCGAACAGAGCGAGGCTGCCCTCATTTCCaccaaagGGACAAGGTTCCACCTGCTGAAAGCCTCAGCTCACCCCGCCTTGGAGCTGTCAGTGGACCAGACCACCCTGCACTACTCTCAGGATGCACATGAAAACACACTATCTACAGAAAATGA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU83482 lncRNA upstream 57840 17939027 ~ 17940846 (+) True G62344
TU83414 lncRNA upstream 184873 17813589 ~ 17813813 (+) True G62294
TU83396 lncRNA upstream 240629 17757855 ~ 17758057 (+) True G62280
TU83311 lncRNA upstream 425985 17568081 ~ 17572701 (+) False tmem167a
XR_005639496.1 lncRNA upstream 453778 17536842 ~ 17544908 (+) True LOC120560616
TU83519 lncRNA downstream 6087 18015405 ~ 18017448 (+) False thbs4a
TU83529 lncRNA downstream 45481 18054799 ~ 18056149 (+) True G62372
TU83579 lncRNA downstream 118218 18127536 ~ 18127745 (+) True G62406
TU83580 lncRNA downstream 119508 18128826 ~ 18129069 (+) False setbp1
TU83666 lncRNA downstream 283942 18293260 ~ 18296903 (+) False G62484
XM_039804126.1 mRNA upstream 305 17991866 ~ 17998381 (+) True tent2
XM_039804124.1 mRNA upstream 727 17991866 ~ 17997959 (+) False tent2
XM_039804125.1 mRNA upstream 727 17991962 ~ 17997959 (+) False tent2
XM_039803325.1 mRNA upstream 31199 17952081 ~ 17967487 (+) True LOC120560642
XM_039803592.1 mRNA upstream 48629 17945795 ~ 17950057 (+) True LOC120560760
XM_039803164.1 mRNA downstream 8049 18017367 ~ 18029386 (+) True thbs4a
XM_039802748.1 mRNA downstream 65450 18074768 ~ 18128897 (+) False setbp1
XM_039802746.1 mRNA downstream 65450 18074768 ~ 18114842 (+) True setbp1
XM_039802747.1 mRNA downstream 68767 18078085 ~ 18110513 (+) False setbp1
XM_039802172.1 mRNA downstream 124329 18133647 ~ 18139334 (+) True slc14a2
TU83072 other upstream 1464537 16533329 ~ 16534149 (+) False LOC120560897
TU83070 other upstream 1522781 16468367 ~ 16475905 (+) False LOC120560890
XR_005639530.1 other upstream 1522789 16468323 ~ 16475897 (+) False LOC120560890
TU82943 other upstream 2221545 15763114 ~ 15777141 (+) True mctp1a
unassigned_transcript_261 other upstream 2379542 15619073 ~ 15619144 (+) True trnac-gca_21
TU83701 other downstream 321387 18330705 ~ 18331230 (+) True G62513
TU83742 other downstream 398069 18407387 ~ 18416006 (+) False tbx5b
TU83744 other downstream 406810 18416128 ~ 18419590 (+) False tbx5b
XR_005639481.1 other downstream 651839 18661157 ~ 18681161 (+) False acacb
TU84360 other downstream 1425589 19434907 ~ 19448950 (+) False rasl10a

Expression Profile