RNA id: XM_039804602.1


Basic Information

Item Value
RNA id XM_039804602.1
length 3078
RNA type mRNA
GC content 0.48
exon number 6
gene id znf366
representative False

Chromosome Information

Item Value
chromosome id NC_053117.1
NCBI id CM020914.1
chromosome length 43979800
location 24924529 ~ 24932594 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

CCTGTTCTCTTTCTTAAGTCACTTCAAATGCTATCCGTGGACAGGCGGCTCATTGTCAGGAGAGTTGCAGTGCAAGCAGGAGGGAGAGTAACACAGgtacaacagcagcagctgcagcagcacttCAGCCAACAGcatcacagaaaacacacatctCTGTTACACTCAGCTGAAAGAAGATGGAAGCAGACAGAGTGAATTTCTCACCAGCAAGAAGTCCTCCTCTAAGACAAGCATCTCAGCACAGTTTCTACCTAAGCCCACCTCCACTCTACATTGAGCACCCTAAATTCTCCCCTCCCAGCTACCCCAGCATATCACCTAGTAGGGACACCTACAGTGCGTTCAGCCCCCCTGCTTTCTTTCCCATGCTTGGCACCAGTTATACCCAAAAGGAAGGATCCCAAAAACGCAAAAGAACTCCTATTAAAATGGACACCCAAGGAGGTGAATCTCCTGACAGAGAAGCAGAGGAGGCAGACGAAAGCAGCAGTAAGAAGACGGCGCACCTATCCCACAGCCGCTTCTCCCTCCCATCTCGCCACATTCCTTCCCCATCTCCTAAGCCCATCCCTGGTATGATCGAGCTCAACAGACTGCAGCTTCATCACAGATCACCAGGTATGAATCTACCTGCACAGGTGAAACAGGAGCCTCTCAGTCCTTCCCCTGTTtggcctccctctcctctcctcctgcacCCTCCGTACTTCCCACCTCTCCACCACAGCCTCCTCCCATACCCATTCTTCATGCCCGGCCCTGTCATGCACCTCTCCCCTGGTTCTTTCTACCCAAGAGAGGACCTCCGCCCCGGGCACCGTGGCCGTGACGGACCTCCTAGCAGGGGAACGACTAGTGCTGAAAAGCTCGGTCTCAACGTCCACGTGGATGACAGCTATTATGTAGACGTGGGTGGAGACCAGAAGAGATGGAAGTGTCGTATGTGTGAGAAGTCCTACACTTCCAAGTACAACCTGGTCACGCACATCCTGGGGCACAACGGCATCAAGCCACATGGGTGCCACCTGTGTGGGAAGCTGTTTAAGCAGCTGAgccacctgcacacacacctgctcacCCACCAGGGCATGAGGCCCCACAAGTGCCAGGTGTGCCACAAGGCCTTCACTCAGACCAGCCACCTGAAGAGACATATGATGCAGCACAGTGACGTAAAGCCATACAGCTGCAGTGTGTGTGGCAGGGGTTTTGCTTACCCCAGTGAGCTTCGCGCCCATGAGCTGAAGCACGAGAAAGGACAGGAGAACGTATGTGTGGAGTGTGGTCTGGATTTCCCCACACTGGCCCAGCTAAAGAGGCACCTGACCGCCCATCGTGGGCCCACCTTGTACAGGTGTGCAGAGTGCCAGAAGACTTTTCAGTACCCGAGCCAGCTTCAGAACCACATGATGAAACACAAAGACATCAGACCGTACATCTGCAGCGAGTGTGGGATGGAGTTCATCCAGTCTCACCACCTGAAACAGCATACTCTCACTCACAAACTTTGTGGGAAGGAGTTCAACAGGATGCATAACCTAATGGGCCACATGCATCTCCACTCAGACAGCAAACCCTTCAAATGCCTTTACTGCCCGAGCAAGTTCACCCTGAAGGGAAACCTCACCAGACACATGAAGGTCAAACATGGTGTCATGGACAGAGGGCTGGATGAAAGATTGTTTCGTCAAAGAGGGCGATTCTGCTTGTCCACTCCCATGGGCCTCCTTACCCGCTTCAGCCAAGAGGAGCCATTTGATCTTTCCCAGAAGCCCCCGGGCCTTCCTAGCCTCCGTGTCTCCCAGTCGGATGGCGAGAGCGTCCCTGGAAGCTCGTgtcaggaggaggatgaggagagtTTGTACAGAAGGAGCCAGTACAGCCCTGAGGTGGACCCACATGAGCCGGCAGGCGAAGACCAGTACATCCCTGAGCTGAAGGAGAGAGGGCAGGGGTCTCCAGCTGTTCTAAGGCCAGGGGACAAGCAGAAACAAATGTATCAGCATAGTTTAGATGAACAGACATATGAGAGGGAGTCAGGAGCAGAAGGGGGGGAACAGGTGCACCGCTCACAGTCAGAAGACATGTCTGAGATGGCCTATGAGTCTGATTTAGAGCTAGGTGACCAGGTGTACCAGCATGAAACAGGCCGTAGAAAGTCTTATGATTATTACTCTGATTCAGAActagaagatgatgatgatgagccaGAGCAAAGCAAACAGCAGATTGATGGCTTGTGTGATGTAGCAGGGAGGAACCAGAGCAGATCAAAGACAGGTGAAAGAGTGCATCATTTGCACACAAGTGAATTCATGGGAATTACGGGTTCACAGGAGGAAAAACAAGACAAAGAATGagaaaaaatagaagaaaaatgaCAAGAAGATGCAGGTTTTTAGGGAAGGCTGGTGTTCTTCTGACAGGAAAGTGGAAGTAAGATGTGTAGGTCTTTAAATGAAACTGATTATGAAGAATGTGGTATAGAGATGAGCACAAAAAGCATATGGTGTTTATTAAGAgcaaaaaataacaatgaagtAACGGAAATACAAAACTGTGAAgcaaaaaaagcagaacatATACACTGATAAACAGTCACTGAAACTAGgtttatgtacattttatgaGTGAAAAAGATTTGATTGGGTTTGGCTTTTTTGTgtataaaatgcaaaaaaaatacatttttacaaattatTTTGCAATATTGACTCAAATATGCTATCCTGCCTATGactcttttaaatgtgtaaatctATGATATAATAATCAAAAATGTGTAATTGCTCAAACCAGTGTGCATGTTTGAGGtccttttgtttgttgttttgtttgtttgtgggaCATTGTGTTGTTAACAGACATGCCAAAGCTTGAGTTTCTTAATTCATTGAGTGTCTTTATGAAATAAACTGTGATTCTGATTAatgtttagattattttttatgtatatgcGTTTGTTAGTTCAGTTTTGTAAGGATGGCTATGTTTTTATTGTATGGCAGTGTAATGGTGGTCATCTGAATATgattctgctaaataaatacaaaaataaaagcttggaCGCATGAA

Function

GO:

id name namespace
GO:0005488 binding molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU86090 lncRNA upstream 32012 24876562 ~ 24892517 (+) True G64287
TU86081 lncRNA upstream 61799 24860249 ~ 24862730 (+) True G64279
TU86075 lncRNA upstream 101478 24822491 ~ 24823051 (+) False prxl2c
TU86072 lncRNA upstream 102181 24821314 ~ 24822348 (+) False prxl2c
XR_005639412.1 lncRNA downstream 102115 25034709 ~ 25040898 (+) True LOC120560056
TU86234 lncRNA downstream 277330 25209924 ~ 25210170 (+) True G64392
TU86313 lncRNA downstream 327122 25259716 ~ 25302920 (+) True G64450
TU86352 lncRNA downstream 573570 25506164 ~ 25506568 (+) True G64489
XR_005639499.1 lncRNA downstream 615429 25548023 ~ 25552264 (+) True LOC120560635
XM_039803214.1 mRNA upstream 23430 24895062 ~ 24901099 (+) True smyd1b
XM_039803215.1 mRNA upstream 23559 24895062 ~ 24900970 (+) False smyd1b
XM_039802672.1 mRNA upstream 75174 24843706 ~ 24849355 (+) True znf367
XM_039802663.1 mRNA upstream 87081 24823720 ~ 24837448 (+) False cdc14b
XM_039804591.1 mRNA downstream 3066 24935660 ~ 24948527 (+) True mrps27
XM_039804129.1 mRNA downstream 25568 24958162 ~ 24962478 (+) True ptger4a
XM_039804131.1 mRNA downstream 41742 24974336 ~ 25000464 (+) False loxhd1b
XM_039804133.1 mRNA downstream 41753 24974347 ~ 25000464 (+) False loxhd1b
XM_039804130.1 mRNA downstream 41754 24974348 ~ 25000464 (+) True loxhd1b
XR_005639471.1 other upstream 89898 24823718 ~ 24834631 (+) False cdc14b
XR_005639472.1 other upstream 89909 24823719 ~ 24834620 (+) False cdc14b
TU85875 other upstream 1231238 23692662 ~ 23693291 (+) True G64108
TU85622 other upstream 1994324 22929899 ~ 22930205 (+) True G63905
XR_005639510.1 other upstream 3325730 21588876 ~ 21598799 (+) False LOC120560787
TU86491 other downstream 752378 25684972 ~ 25696570 (+) False LOC120561182
TU86550 other downstream 981788 25914382 ~ 25915529 (+) False LOC120560031
TU86770 other downstream 1480275 26412869 ~ 26414597 (+) True G64814
TU86790 other downstream 1561741 26494335 ~ 26496386 (+) False c6h22orf39
TU86791 other downstream 1561741 26494335 ~ 26496328 (+) False c6h22orf39

Expression Profile