RNA id: TU86081


Basic Information

Item Value
RNA id TU86081
length 1832
lncRNA type inter_gene
GC content 0.36
exon number 3
gene id G64279
representative True

Chromosome Information

Item Value
chromosome id NC_053117.1
NCBI id CM020914.1
chromosome length 43979800
location 24860249 ~ 24862730 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

AGGTATTAAAGATTCCATTCACACAACATGGTTAGTATAAACCACCcagtatatttttatattttattgagGTATTCTAATCTAAAAATCTAAAATGGATTTAAgtacaaaaacataaaagaaaaatgacCCTATTTAAAAAGATATACAAAAAAGTACATTACAAAGCTACTCTGTAACAGCAACTGGAGTAAACGTAAGTATGTGCTTTCAcctctttgtctctgttttttaAGAGGATCACTCACTTTGGAATGAAAcctaaaaaaatctaataaatgAGCTCATTGAAGCTTTCTGGAAGGTTTTACAGCCTTCTCTGTATGTAGCAGCTTGTCTTCATGGGATTAGTCATGACAGAAGAAGAAGCGGGTCAGAGTTTTAATCATCAGAGGACAAGACCAAACACGGAACATTTAAGTCCAATTTACTTTCATTTCTATAATGATCTGGAGTTCCATTTCCAAGGGTAAGTTACAGTATTTATAGAGCCCTCAGACATAAAGAGTTCTATCGTAGCCTAGTCTTTGAGGACTCTGGAGTCTCTTGCTCTCATTTGTCTTCTAGCGCTTGTAAAAAATAAGTTATGACAAAGaacaaatgtgaaaatgtacgtatttacCAAACACATTGAATTCAGTATTAACATGATATTCACAAGTGTCCTCTGATGGCGAGTGTTGGCCCAGATAATTGATCATAACTTTAGTGATTGGCAGTTGCCCCCCTCCCTCTGGTTGGTGGTTTGACTGCGTTTCTTAATATAGCCAGAAAACAATCAACACACTTTGACCTGCATCTCTCTGAAATTACTGAATATTATTTGCAAAGAGCAGCAAAACGTCTCTCTCTTCATAGTTTGACTATTGCTAGACAATCATCGCTGGTACATCTGGAGGCACAAATCACAGAGAAAAATATAATGTATCAAATCACATTTTACagagatttattttttgttttgtttacaatGATTCTATAAATGCAATGGTGGAAGTCATATTCACATTATTTACCacactataaaaaaataatactcccaTTATAAGTAAAACTCCAGTGTTTAAACTTTTACATAAGTagaagtacaaaagtattagcaacaaaatatacttaaagtattacaagtaaaagtactaacaaTGCAGAATGTCCCCATTCCATGTTGTTATTGGATCATTATTATTGATGTGTTATCATGTAAGCCATACTTTATTGTTGCACACAGTCAAAGTGGAGCTGATCTGAAACACTTTATTTAGCCTACAGTTTGGTCTATAACAACGCATccaattttataaaaatcaTATGTTAGGAAGGTAAAATCTTAACCTAAAAAAGTAGCTGTTTAATAaatgtggagtaaaaagtacaatatttccctctaaaATCTTGTCGGACAGAATTAAAGAgtataaaatagaaatactaAAGTACGAGTACCTCTctcaataaaaagaaaaaaaccatAAGGACTGACACAAGCTCTTGAAACACCAACTGTGAAAACACAAATTTCGTGAAATTTTCTTTCCTCATCTCAGTAAGCTGCTTTCAGCTTGTTCTTTTTGATCAGCCACTGCAGCACCATCAGTGTTCTCTTCACTTTAGGATGAGCACATATGGGCTTCTTCATCTCCTTTACATACAGTATCAATGCAGGGATGTCACAGGCGCCGCTGCTTGTCTGCATGTTCCAGCTGTGAACCTTCAGCAGCAGTCCCACAGGGATGTCCGTTGCTGTTGCGACGCAGCATTTTGGGATGCCAGCTTCAGTAGAGGTGATGGCCAAAGTACACAGACAGGCAATCACAAACGCAACTTTCACATCC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU86075 lncRNA upstream 37198 24822491 ~ 24823051 (+) False prxl2c
TU86072 lncRNA upstream 37901 24821314 ~ 24822348 (+) False prxl2c
TU86073 lncRNA upstream 37901 24821314 ~ 24822348 (+) False prxl2c
XR_005639429.1 lncRNA upstream 341376 24514819 ~ 24518873 (+) True LOC120560123
TU86043 lncRNA upstream 497340 24362475 ~ 24362909 (+) True G64251
TU86090 lncRNA downstream 13832 24876562 ~ 24892517 (+) True G64287
XR_005639412.1 lncRNA downstream 171979 25034709 ~ 25040898 (+) True LOC120560056
TU86234 lncRNA downstream 347194 25209924 ~ 25210170 (+) True G64392
TU86313 lncRNA downstream 396986 25259716 ~ 25302920 (+) True G64450
TU86352 lncRNA downstream 643434 25506164 ~ 25506568 (+) True G64489
XM_039802672.1 mRNA upstream 10894 24843706 ~ 24849355 (+) True znf367
XM_039802659.1 mRNA upstream 22801 24823720 ~ 24837448 (+) True cdc14b
XM_039802660.1 mRNA upstream 22801 24823720 ~ 24837448 (+) False cdc14b
XM_039802663.1 mRNA upstream 22801 24823720 ~ 24837448 (+) False cdc14b
XM_039802662.1 mRNA upstream 23482 24823968 ~ 24836767 (+) False cdc14b
XM_039803214.1 mRNA downstream 32332 24895062 ~ 24901099 (+) True smyd1b
XM_039803215.1 mRNA downstream 32332 24895062 ~ 24900970 (+) False smyd1b
XM_039804602.1 mRNA downstream 61799 24924529 ~ 24932594 (+) False znf366
XM_039804601.1 mRNA downstream 61800 24924530 ~ 24932594 (+) True znf366
XM_039804591.1 mRNA downstream 72930 24935660 ~ 24948527 (+) True mrps27
XR_005639471.1 other upstream 25618 24823718 ~ 24834631 (+) False cdc14b
XR_005639472.1 other upstream 25629 24823719 ~ 24834620 (+) False cdc14b
TU85875 other upstream 1166958 23692662 ~ 23693291 (+) True G64108
TU85622 other upstream 1930044 22929899 ~ 22930205 (+) True G63905
XR_005639510.1 other upstream 3261450 21588876 ~ 21598799 (+) False LOC120560787
TU86491 other downstream 822242 25684972 ~ 25696570 (+) False LOC120561182
TU86550 other downstream 1051652 25914382 ~ 25915529 (+) False LOC120560031
TU86770 other downstream 1550139 26412869 ~ 26414597 (+) True G64814
TU86790 other downstream 1631605 26494335 ~ 26496386 (+) False c6h22orf39
TU86791 other downstream 1631605 26494335 ~ 26496328 (+) False c6h22orf39

Expression Profile