RNA id: trnav-aac_9


Basic Information

Item Value
RNA id trnav-aac_9
length 73
RNA type tRNA
GC content 0.52
exon number 1
gene id trnav-aac_9
representative True

Chromosome Information

Item Value
chromosome id NC_047598.1
NCBI id CM018544.1
chromosome length 33267568
location 2695016 ~ 2695088 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

gtttctgtagtgtagtggttatcacGTTCGCCTAACACGCGAAAGGTCCCCGGTTCGAAACCGGGCAGaaaca

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU69182 lncRNA upstream 47521 2646000 ~ 2647495 (+) True LOC113524007
XR_004578037.1 lncRNA upstream 74937 2611253 ~ 2620079 (+) True LOC117597104
TU69170 lncRNA upstream 77562 2616460 ~ 2617454 (+) False LOC113523979
TU69167 lncRNA upstream 80839 2605785 ~ 2614177 (+) False G58442
TU69185 lncRNA downstream 20545 2715633 ~ 2782340 (+) False G58458
TU69186 lncRNA downstream 20545 2715633 ~ 2782340 (+) True G58458
TU69207 lncRNA downstream 92381 2787469 ~ 2802044 (+) True G58473
TU69224 lncRNA downstream 138294 2833382 ~ 2834509 (+) False grpel1
TU69241 lncRNA downstream 277484 2972572 ~ 2973113 (+) True G58500
XM_026910122.2 mRNA upstream 47521 2646041 ~ 2647495 (+) False LOC113524007
XM_034303824.1 mRNA upstream 76221 2616334 ~ 2618795 (+) True LOC113523979
XM_026910088.2 mRNA upstream 76221 2616334 ~ 2618795 (+) False LOC113523979
XM_034303825.1 mRNA upstream 80952 2607058 ~ 2614064 (+) True LOC117597103
XM_026910118.2 mRNA downstream 116286 2811374 ~ 2819044 (+) True tada2b
XM_026910129.2 mRNA downstream 126223 2821311 ~ 2833799 (+) True grpel1
XM_034303986.1 mRNA downstream 166712 2861800 ~ 3081489 (+) True sorcs2
XM_034303987.1 mRNA downstream 336325 3031413 ~ 3081489 (+) False sorcs2
XM_034303808.1 mRNA downstream 391901 3086989 ~ 3097607 (+) True LOC113523990
trnav-cac_3 other upstream 2547 2692397 ~ 2692469 (+) True trnav-cac_3
trnav-aac_8 other upstream 4434 2690510 ~ 2690582 (+) True trnav-aac_8
trnav-aac_7 other upstream 14808 2680136 ~ 2680208 (+) True trnav-aac_7
trnav-cac_2 other upstream 18806 2676138 ~ 2676210 (+) True trnav-cac_2
trnav-aac_6 other upstream 20272 2674672 ~ 2674744 (+) True trnav-aac_6
trnav-aac_10 other downstream 11131 2706219 ~ 2706291 (+) True trnav-aac_10
trnav-aac_11 other downstream 20390 2715478 ~ 2715550 (+) True trnav-aac_11
trnav-cac_4 other downstream 21061 2716149 ~ 2716221 (+) True trnav-cac_4
trnav-cac_5 other downstream 45732 2740820 ~ 2740892 (+) True trnav-cac_5
trnav-cac_6 other downstream 46833 2741921 ~ 2741993 (+) True trnav-cac_6