RNA id: TU196413


Basic Information

Item Value
RNA id TU196413
length 2490
lncRNA type inter_gene
GC content 0.45
exon number 1
gene id G165879
representative False

Chromosome Information

Item Value
chromosome id NC_047604.1
NCBI id CM018550.1
chromosome length 29376037
location 15019814 ~ 15022444 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

TTACAGATTATTGATTTCTGAACTTATCACCCACTCAACCTAAACCAGTTACAATGTGTTCAAACatagatttaaaacattttgtatctTGTAAACAGTTTCATTACACCTGCAGTTAGATTcgagttgacattatttatgctTGTTTTCAAGTTACGGAGCTTCTTTTAGGAAAAACATTGGTGTGATTGGTATAATTTTAAACCCATTCAGTTACTGTGATCAGCCAAATAAgtttataactataataataattaaataacagctACAACAATCACATCCCTAAAAACTCTGTTTGTTGTTCTGTgggaatccttaaaggttctttgtaaAACCTGATAACTGAGTGTTTATTAAAAGAAGTTCAGGTAGAACCTGAACTTCGCACTCCTTTGAAAGGTTTTATAGAGTGTATAACTTTGTAACCTTGATTGCAGTTGATAGGAGGCTAGTTTATAGTAATCTCAACATTCtgcacattattaaaatgatgaCTGTGGACCCCCTGGCTATGTGTGAAGTACTTGTTCATTTACAAGCATATTTTTTGATGATAAGCATAAGCTGTATTAAGCTTCTGTGTTGTTATTGATCAAAGGTGATTTGGTCTGTGGTTCAGTGCAGTGAGACAGTAGGAATGTCTTGTATCAAATGTTACGTcttattgataaaaaaaaatcacaaagaatTCAAAGTACAAGTAATAGTGCGTAAaataaaaaaccaaaacaatagTAAAGTTTTCTTCTGGTCTGTTGGAGTCCATTATAATAGTGTTGCGCAGTCAGTATATTCTCTTCCGCTGTGTTTCTAAGTGAGGTGTGTATCCAGAAGACACCCAGCAGTAGCTGTCTGCTGTGGCGCTTTTCTTCTGGGCGTCTTTGCGTGAGCGATTCCAGCGGTGCACAACAATCACCGCAGTGAGAGTAATCAGGAGGAGAAGGGGGATTACCGAGCCCAAAGCATACACCAAAACCCAAGAAGCGACAACTGAGCCATCATTGCGCACGCTTTGGTGCGCTTCCGCAGTTGTCTCTGTGTTTAAACGTGGCGTGACTGTGGTTAGTGCTGGCTCATCCAAACCTTTAGTTAACACTATTTCGAAATCACGAGAAGTTGTTGCGCGCTTTTGGTCTGGAACACAGCTGATGCGGTTCTCAGCTAAGCGGAAGCCTGGGCCACAAGAACACGTGTAGCTTCCGTCTGTATTGCTACATAAACCTTCACAAGGCCGATTCAGACATTCGTCGATATCTACACATTGCTCTTCATACTTTCTAAAGCCAGGAGAGCAGTAACAAGAGAACGAACCCTCGGAATTGAGACACTTGGCGTGACGCGCGCACACCGTTTCTGCGCATTCGTCTATGTCCTCGCACACACCATCAACGTCCTTAAAGCCTTTCTTGCATTCACACTCATAGCCCCCTTGTTTATTGTGACATATATGACCATTGCAAATGTCCTGGTTACATTCGTCAACATCTTTGCAGCTGACCTTGTCTTCGGAAAGCTCAAAGCCCTCTGGACACGTGCATGCAAACCCGGTGGCTGTCGGCGTGCACTCGTGTTTGCAGGGTGAATTGCGGCAGGCGTCTTTAAGGAAACATGTGACTTTATCGTCGCCGAGGTAGTAGTCCTCCTTACAGTCACAACGCACTCCgacatcaccatcatcaaagcACAGCTGATCACATCCCCCGTTTCTGGTTTTGCAGCTCCGCTGACCCGAGGCGCAGTATGGCCCGGGCTTTTCCCAGACGAAATGCGCGCCTCTTTCGTTACACACCGCATAAGTGTTCACCTCACTGTCATACGCGCACCTTATCTCAGCGAATGTTGCATGAGGTAACATAGCCAAACCGCGGTCTTGTTTAAGTGgcacttttaaaaatggaagCGTGTAATTAACCTCTCCCGGTCCTGCAAGTAACAAGGGTTTGCACATGCCcctaaaataatacacacacatatacagcgCGCGCTCCCTACAAGAGCCATCGCTCCATTTCAGGCCCTCGGTTGCAGTAGAGAGCGAGACGCAGCGCTCCTCCGTGCACGTGCTCTTCGGTTCGTTTCTCCAGTTGGAGTAGGAGGAATCCGGGGCGCCGGAGATCCATCTGAAGCCGTGCAGCCCCTTGTCACTGAGCACACAGCTCCCTTTAGAAAGCTGCAGTCCTATCCAGACTTTTTCCCGCACTGAAAGCTTCCCGGCTAACGCGAGAAGTGACTTCACAGCTTCTAAATCATTATCGTCTCTTACTGTAATCAAGTAGCCGCCGTTTTCGAAGCAGTTCGCACTGGCTTTCTCAAACCTGACCTTTTCTGTGTGGAGAGTGAAGCACTCTTTGGCTGTGCACTTGGTGGTGGCACAAGTGGCTCTTTGAGCAGGCAGCAGAGCGCACAGCACCGCGATCAGAGCGCGCAGCATCGTCCCGCCGGTTTAACGCATATATATCCAGTTCATGTCCCAGACTAGATGCTGTTCGT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU196407 lncRNA downstream 22623 14996631 ~ 14997191 (-) True G165873
TU196398 lncRNA downstream 65698 14951741 ~ 14954116 (-) True G165864
TU196395 lncRNA downstream 65785 14951741 ~ 14954029 (-) False G165864
TU196384 lncRNA downstream 77771 14941701 ~ 14942043 (-) True G165856
XR_003403867.2 lncRNA downstream 145622 14862154 ~ 14874192 (-) True LOC113538627
TU196444 lncRNA upstream 57397 15079700 ~ 15082205 (-) True nenf
TU196420 lncRNA upstream 77789 15100092 ~ 15106810 (-) True G165882
TU196458 lncRNA upstream 150934 15173237 ~ 15226726 (-) True G165907
TU196518 lncRNA upstream 221982 15244285 ~ 15244498 (-) True G165949
TU196519 lncRNA upstream 222563 15244866 ~ 15245463 (-) True G165950
XM_034307760.1 mRNA downstream 4348 15006613 ~ 15015466 (-) False LOC113538997
XM_026934516.2 mRNA downstream 4348 15006613 ~ 15015466 (-) True LOC113538997
XM_026934518.2 mRNA downstream 5795 15006613 ~ 15014019 (-) False LOC113538997
XM_026934156.2 mRNA downstream 79498 14934142 ~ 14940316 (-) True mocs3
XM_026933939.2 mRNA downstream 89439 14889806 ~ 14930375 (-) True prkd3
XM_026934407.2 mRNA upstream 28544 15050847 ~ 15056676 (-) True marc1
XM_026934108.2 mRNA upstream 37561 15059864 ~ 15064338 (-) True kcnk3b
XM_026934105.2 mRNA upstream 42736 15065039 ~ 15074352 (-) True ezra
XM_026934104.2 mRNA upstream 52608 15074911 ~ 15079591 (-) True tagapa
XM_026934112.2 mRNA upstream 57393 15079696 ~ 15082202 (-) False nenf
TU196128 other downstream 285964 14727204 ~ 14733850 (-) False nkx2.2a
TU196126 other downstream 290793 14727204 ~ 14729021 (-) False nkx2.2a
TU195857 other downstream 829329 14188238 ~ 14190485 (-) True G165451
trnal-uaa_1 other downstream 1164122 13855610 ~ 13855692 (-) False trnal-uaa_1
TU194859 other downstream 2114231 12903788 ~ 12905583 (-) False timm9
XR_004578922.1 other upstream 87291 15109594 ~ 15117364 (-) False capn3a
TU196803 other upstream 282320 15304623 ~ 15322004 (-) False pgfb
XR_003403862.2 other upstream 612783 15635086 ~ 15663495 (-) False ktn1
XR_003403861.2 other upstream 612783 15635086 ~ 15663495 (-) False ktn1
XR_003403876.2 other upstream 698154 15720457 ~ 15762718 (-) False eml5

Expression Profile