RNA id: XM_026934518.2


Basic Information

Item Value
RNA id XM_026934518.2
length 2289
RNA type mRNA
GC content 0.44
exon number 20
gene id LOC113538997
representative False

Chromosome Information

Item Value
chromosome id NC_047604.1
NCBI id CM018550.1
chromosome length 29376037
location 15006613 ~ 15015466 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

CGTTGGAGAAAACTTGTTACAGCCTGAGGACTTGGCTAAAGTGGAATGGAGAAGGCCAACGGATCTGGTGTCAAACCCACAACTGATTGTTGATGGTGTGTCCAGGTTTGACTTTGCCCAGGGCGTAGTGGGAACTGCTGGTTTCTAGCTGCAGTTGGTGCTCTGACATTTCAGAGGCACATCATGCAGAAGGTCTTTCCAGTTGAACAGTCATTTCAGAAGGATTATGCAGGAATATTTCACTTTAGGTTTTGGAGGTTTGGGAAATGGGTTGATGTTGTAATCGATGACAAACTGCCAACCATTAATGGACAACTCATTTTTGTACGCCCCCAAAGTCCTAAAACTCCCCAAAGTCCCAGAATTCCTGAGTTTTGGCCTGCTCTGTTAGAAAAAGCATATGCTAAAGTGTGCGGGTCTTATGAAGACATGAAATATGGCTGGGTATCTGAAGCCCTGAAGGACTTTACTGGTGGCGTGCACATGACATTATGCCCCCAAAATGAGAACCCTCAAATACTGTGGGACCTGATCCATCGAGCAGCCAGAGCCGACTCTCTGATGGGTTGTGGCACACCTGGAAATGCAGCGTTTAATACACAGCAGAACAATGGTCTAGTGGAGGGTCATGCCTACACTGTGACAGGGGTCACTATGGTGACGAGCAATGGCAATCAGGTTCAGCTGGTAAGGCTCTTAAACCCCTGGGGGCACACAGAATGGAGTGGAAGCTGGAGTGATGGATCACAAACATGGATGACAGTTAGTGAGGAAGAACgcaaaaattacacaaattttGTCAATGATGGAGAGTTCTGGATGTCTATGGAGGATTTCTGCAAATGCTTCTGTCAGCTGGATATCTGCAATTACTCTCCTGCTTTTCTGGATGGTTCCCCTGAAAGCCACTGGATCTTATCAATGTACGATGGCCGCTGGCTCGCAGGCAGCACAGCTGGTGGCTGCATGGATTGTGAAAACACTTTCTGGACCAACCCCCGTTTTCCAGTCAAGATCACTGACATAAACAGAGCCTGTGAACCAATACCAAAGACAGCGCCAAATATACTTGTGTCTCTTATGCAAAAACCTGATAAGAGAAACAGACGTCTCaccagaaaacttcaccttggTTTCAGCATTTTCAAGagaACACCAGAGATGAAAGATTCTAGACGGGTATCCACAGATTCCTCCATTAGCACCAGCAATCTGGTGTATTCCACCAAAGTGATGTTTGATTCACGTGAAATAACGGAGTATGTGAGACTGGAACCAGGAGAGTACATCATCATACCATATACATTTCAGCCCAATAAAACTGCCTCCTTCATCCTGACCCTCTGTTCTAAGACAGAAACCCACACAGGcGAACCCTTTATGGTACTCAGCTCTGAGGGGAAAGTGCTGCGTCAAATATCTGATCATTATCAGGAAATCAACGCAGAGCAGCTTCAGAGATTTCTAAATGAGAACTGTTTTGGAGGTGGTGTGCAAAGCACAGGAGGTTTCAGCTTGGATGCTTGCCAGAGTATCGTTGCTATGATGGATCTCTCAGTTACTGGAACACTCAATGCATTAGAACTCAGCGAGCTGTTGAAAAAAATTGATTTGTACAAGGATATCTTCTTCCACGTGGACAATGACAGAGATGGCATTCTGTCACTGATAGAGCTTCGGCATGCAGTGGAAGCCACAGGCTTCCGTATTAGTGATAATTTGCTGAAACTTACAACTCTACGCTTTGCTGACTCCACTGGGCGAATCACTCTGGAGAGATTCATCTGTCTGGCTCTACGACTAAGTTGCATGTCTGaaatattcagAAAACTTGCTGACAGAAAGTATATGCACCTCAAAGAGCACGAGTGGCTGCACCTTACTATGTACTCCTGAAGAAGTGGTGGGAACCATATAAAGGAGGATTTCAATCCTACAACATATACAACAGCACACTTCAAATTATTATAGCGCTTACTTGGGTTGCCTttgaaaaatttaattaatggcATTTTGTTACTTAAATAAAGAGAAACACAAAGCATGTCTTGGCACACCACTATGTCTACTTCTGCTACGTGTTGTGGCAGAGAGATTAAGGAACACTGCCCTGTTTTGTTGGCACTTGCACTTCGGTATCAAATTATGTTTGTGAACTTTAGCTAGTCAAACATTTGACTATCGCCAACAGCAAATGTCAAGGTGGTTTTTCCCCACTGCACATACATTACAAGCTTGTGCAATGGTTTATGCAACATCTTTgcaaataaatctattttaaatgTCAGA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU196407 lncRNA downstream 9422 14996631 ~ 14997191 (-) True G165873
TU196398 lncRNA downstream 52497 14951741 ~ 14954116 (-) True G165864
TU196395 lncRNA downstream 52584 14951741 ~ 14954029 (-) False G165864
TU196384 lncRNA downstream 64570 14941701 ~ 14942043 (-) True G165856
TU196200 lncRNA downstream 132480 14862186 ~ 14874133 (-) False LOC113538627
TU196413 lncRNA upstream 5795 15019814 ~ 15022303 (-) False G165879
TU196415 lncRNA upstream 5795 15019814 ~ 15022444 (-) True G165879
TU196444 lncRNA upstream 65681 15079700 ~ 15082205 (-) True nenf
TU196420 lncRNA upstream 86073 15100092 ~ 15106810 (-) True G165882
TU196458 lncRNA upstream 159218 15173237 ~ 15226726 (-) True G165907
XM_026934156.2 mRNA downstream 66297 14934142 ~ 14940316 (-) True mocs3
XM_026933939.2 mRNA downstream 76238 14889806 ~ 14930375 (-) True prkd3
XM_026933940.2 mRNA downstream 76238 14891331 ~ 14930375 (-) False prkd3
XM_026934223.2 mRNA downstream 128281 14875723 ~ 14878332 (-) True foxa2
XM_026933668.2 mRNA downstream 272605 14727133 ~ 14734008 (-) False nkx2.2a
XM_026934407.2 mRNA upstream 36828 15050847 ~ 15056676 (-) True marc1
XM_026934108.2 mRNA upstream 45845 15059864 ~ 15064338 (-) True kcnk3b
XM_026934105.2 mRNA upstream 51020 15065039 ~ 15074352 (-) True ezra
XM_026934104.2 mRNA upstream 60892 15074911 ~ 15079591 (-) True tagapa
XM_026934112.2 mRNA upstream 65677 15079696 ~ 15082202 (-) False nenf
TU196128 other downstream 272763 14727204 ~ 14733850 (-) False nkx2.2a
TU196126 other downstream 277592 14727204 ~ 14729021 (-) False nkx2.2a
TU195857 other downstream 816128 14188238 ~ 14190485 (-) True G165451
trnal-uaa_1 other downstream 1150921 13855610 ~ 13855692 (-) False trnal-uaa_1
TU194859 other downstream 2101030 12903788 ~ 12905583 (-) False timm9
XR_004578922.1 other upstream 95575 15109594 ~ 15117364 (-) False capn3a
TU196803 other upstream 290604 15304623 ~ 15322004 (-) False pgfb
XR_003403862.2 other upstream 621067 15635086 ~ 15663495 (-) False ktn1
XR_003403861.2 other upstream 621067 15635086 ~ 15663495 (-) False ktn1
XR_003403876.2 other upstream 706438 15720457 ~ 15762718 (-) False eml5

Expression Profile