RNA id: TU196200


Basic Information

Item Value
RNA id TU196200
length 621
lncRNA type inter_gene
GC content 0.50
exon number 2
gene id LOC113538627
representative False

Chromosome Information

Item Value
chromosome id NC_047604.1
NCBI id CM018550.1
chromosome length 29376037
location 14862154 ~ 14874192 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

CAGAAGGCAGCGGGCGAGCAGCGGGCGAGCAGCGGACTCTCACGCCTTTCCTTCCAGCAGCTTACAGGTATGGATCAATTTGCAAAAGTTCATCTTTAACAGCCCTAACCCTTCAAACCTTGCTGGAAGTGCTAGCTTGCCAATCATCCTCACAACACCTTCACCTGCGACTCAGCAGTCACGTATGACCTGGCCGCGTATGAGAGATAACATTCGCGTCTGCAGAGCTGAGAGGGGGGACAAAAGGAAGTTTGACGTTAATGATTAACGGCGCTAAAAGCCCCTGCTTTTGTATTCCCATGGTACCGAGGCTATCTGGTGGCCATGTGACCTGCATGGAAGAGATTGGGGGTGAGCGGTAGAGCAAACACAGGTGCTGTGTTTGGGTTGGAGTTGCCTGTGCTGTCAGGGACAACCACAAACACACGCAGCCATGCCAAGCTCCACAAACAGCCGCCTACGCCAACAGATCAAGTCCAATGTGCTCCTCCCCATCTTCCTATATGTTCCACATCGGAAAAAAGTATCTACCATGTTTAGTGCATTCTATCTGGGGCATCCTTAAGAAACGGGCTTGAAGATGTATagtctaaataaaaacacaattgcCTTTTACTTGTA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU196201 lncRNA downstream 1580 14860049 ~ 14860606 (-) True G165721
TU196048 lncRNA downstream 213890 14647199 ~ 14648296 (-) True G165581
TU195921 lncRNA downstream 449519 14408793 ~ 14412667 (-) True G165494
TU195859 lncRNA downstream 621183 14192997 ~ 14241003 (-) True G165452
TU195855 lncRNA downstream 668615 14190691 ~ 14193571 (-) False exd2
TU196384 lncRNA upstream 67568 14941701 ~ 14942043 (-) True G165856
TU196395 lncRNA upstream 77608 14951741 ~ 14954029 (-) False G165864
TU196398 lncRNA upstream 77608 14951741 ~ 14954116 (-) True G165864
TU196407 lncRNA upstream 122498 14996631 ~ 14997191 (-) True G165873
TU196413 lncRNA upstream 145681 15019814 ~ 15022303 (-) False G165879
XM_026933666.2 mRNA downstream 89305 14727133 ~ 14772881 (-) False nkx2.2a
XM_034307754.1 mRNA downstream 89305 14727133 ~ 14772881 (-) True nkx2.2a
XM_026933667.2 mRNA downstream 111797 14727133 ~ 14750389 (-) False nkx2.2a
XM_026933668.2 mRNA downstream 128178 14727133 ~ 14734008 (-) False nkx2.2a
XM_034308239.1 mRNA downstream 159914 14697708 ~ 14702272 (-) False nkx2.4a
XM_026934223.2 mRNA upstream 1590 14875723 ~ 14878332 (-) True foxa2
XM_026933939.2 mRNA upstream 15673 14889806 ~ 14930375 (-) True prkd3
XM_026933940.2 mRNA upstream 17198 14891331 ~ 14930375 (-) False prkd3
XM_026934156.2 mRNA upstream 60009 14934142 ~ 14940316 (-) True mocs3
XM_034307760.1 mRNA upstream 132480 15006613 ~ 15015466 (-) False LOC113538997
TU196128 other downstream 128336 14727204 ~ 14733850 (-) False nkx2.2a
TU196126 other downstream 133165 14727204 ~ 14729021 (-) False nkx2.2a
TU195857 other downstream 671701 14188238 ~ 14190485 (-) True G165451
trnal-uaa_1 other downstream 1006494 13855610 ~ 13855692 (-) False trnal-uaa_1
TU194859 other downstream 1956603 12903788 ~ 12905583 (-) False timm9
XR_004578922.1 other upstream 235461 15109594 ~ 15117364 (-) False capn3a
TU196803 other upstream 430490 15304623 ~ 15322004 (-) False pgfb
XR_003403862.2 other upstream 760953 15635086 ~ 15663495 (-) False ktn1
XR_003403861.2 other upstream 760953 15635086 ~ 15663495 (-) False ktn1
XR_003403876.2 other upstream 846324 15720457 ~ 15762718 (-) False eml5

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
zebrafish (Danio rerio) TCONS_00024549 False 717 lncRNA 0.43 2 NC_007128.7 42545940 ~ 42564152 (-)
grasscarp (Ctenopharyngodon idella) CI01000314_00916594_00919809.mRNA False 1565 mRNA 0.44 4 CI01000314 916154 ~ 920514 (-)
eurasian perch (Perca fluviatilis) TU180947 False 2847 TUCP 0.43 4 NC_053124.1 18006172 ~ 18015290 (-)
tiger barb (Puntius tetrazona) TU180947 True 2183 lncRNA 0.41 3 NC_056715.1 19581444 ~ 19592664 (-)
mexican tetra (Astyanax mexicanus) TU180947 True 1691 lncRNA 0.36 1 NC_035911.1 22488529 ~ 22490219 (+)