G165581


Basic Information

Item Value
gene id G165581
gene name NA
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047604.1
NCBI id CM018550.1
chromosome length 29376037
location 14647199 ~ 14648296 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU196048
tctctctctctctcacacacacacacacaagcaaaagcaaaacaagGCACTCACAGCCTTTCTTCTGATCTTGAGTAGGTGAACAACTCTTCCTCCAACTCATGCCTTCTTTTTtTACCTTTCGTGTATACTCTTCTGAATAGATCCAACAGTTTCGAAGTATTCAGAAGTGCAAAAAGCCATTACAGGTTAGCTGAAACCCCCGTAAGAGAGCTAGCACAGTAGCGTTAGCTATGCCCCAAACTGCAGCTAAACAGTGCATCTAAGCTTGTGTTAGCAGCGGTTGCCATGTGTactgcgacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacaaacaaaaaaaa

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU196048 True 412 lncRNA 0.45 2 14647199 14648296

Neighbor

gene id symbol gene type direction distance location
ralgapa2 ralgapa2,LOC107687934 coding downstream 78101 14469694 ~ 14569098 (-)
LOC113538539 LOC108270105 coding downstream 329085 14308595 ~ 14318114 (-)
vps39 vps39 coding downstream 341248 14291331 ~ 14305951 (-)
galnt16 galnt16,LOC107707671,LOC107687852 coding downstream 361836 14254350 ~ 14285363 (-)
numb numb coding downstream 396399 14202819 ~ 14250800 (-)
nkx2.4a nkx2.4a,nkx2-4,LOC108269668,LOC108428605,LOC107707661,LOC107558479,LOC107737279,LOC107688185 coding upstream 49412 14697708 ~ 14702272 (-)
foxa2 foxa2 coding upstream 227427 14875723 ~ 14878332 (-)
prkd3 prkd3,LOC108270251,LOC108435798,LOC105909481,LOC101070414 coding upstream 241510 14889806 ~ 14930375 (-)
mocs3 mocs3 coding upstream 285846 14934142 ~ 14940316 (-)
LOC113538997 LOC108270103 coding upstream 358317 15006613 ~ 15015466 (-)
G165494 LOC108270031,LOC108428624 non-coding downstream 234532 14408793 ~ 14412667 (-)
G165452 NA non-coding downstream 406196 14192997 ~ 14241003 (-)
G165352 erh,ERH,LOC106607637 non-coding downstream 469523 14172660 ~ 14177676 (-)
G165261 NA non-coding downstream 763340 13883517 ~ 13883859 (-)
G165242 NA non-coding downstream 787534 13859197 ~ 13859665 (-)
G165721 NA non-coding upstream 211753 14860049 ~ 14860606 (-)
LOC113538627 NA non-coding upstream 213858 14862154 ~ 14874192 (-)
G165856 NA non-coding upstream 293405 14941701 ~ 14942043 (-)
G165864 NA non-coding upstream 303445 14951741 ~ 14954116 (-)
G165873 NA non-coding upstream 348335 14996631 ~ 14997191 (-)
exd2 exd2,LOC107558452 other downstream 446402 14190691 ~ 14200797 (-)
G165451 LOC108269968 other downstream 456714 14188238 ~ 14190485 (-)
trnal-uaa_1 NA other downstream 791407 13855388 ~ 13855792 (-)
tbpl2 tbpl2,LOC107729258,LOC107693101,LOC107586674 other downstream 1560737 13079534 ~ 13086462 (-)
timm9 timm9,LOC107729247,LOC107693171,LOC107689314 other downstream 1741597 12903776 ~ 12905602 (-)
nkx2.2a nkx2-2,nkx2.2a,LOC107558480,LOC107707659,LOC107737280,LOC108435751 other upstream 78837 14727133 ~ 14772881 (-)
nenf nenf other upstream 431400 15079696 ~ 15082205 (-)
capn3a capn3,LOC108269768,LOC108435782 other upstream 458824 15107120 ~ 15117364 (-)
pgfb pgf,LOC108435746 other upstream 654939 15303235 ~ 15322051 (-)
ktn1 ktn1,LOC107668535 other upstream 984706 15633002 ~ 15663495 (-)

Expression


Co-expression Network