vps39 (vps39)


Basic Information

Item Value
gene id vps39
gene name vps39
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047604.1
NCBI id CM018550.1
chromosome length 29376037
location 14291331 ~ 14305951 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026934013.2
TGACGCAGGTCACGTGCCTGTCGCGCAGCGTGAAGCATCCCGGAAGTTCTGTTTTTTTAGCAAACAGTTAGCTAGTTGGATAACGAACTTTTAACGCTTTATCAGTCTGACAGGTTCTTTTAATATGTGGACACGGTCAGTTAAACCGGAGGCTAACACGGACAACACTGTGTCAAAAATATGGGATGAGATACATTAATTCGCGTAAGCGATGTGTTATAAACAGAGCAGCAGCTTGTTGACAGCGGGGAAGTGGTGTGTTAGGCAGAGAGAGTAGCTAACTCGCGCTGTTTTCGCTTATCGAGTCCCTCTTGGAGGTCTCTCACTTCTTCTAAGCAACCAGGAAACACGGCACGATGGTCTGGACATTAACCACTTGAACTAAAGTCCGCTTCGTTGTGTAATATAGATTATCCAGCTAATtgcacttagctagctagcttgggGATTTACTAGCTTTCCAGTGAGCAGACGCTGACAAAACATAGCTAGTTACATATTTCTTCACAGTTAtatttctttgtaatttttgtGAAGTAATTAAACAGTGTTATATGAGTTGTCATAATGCATGACGCCTACGAGCCCGTGCCTATTTTGGAGAAACTGCCCCTCCAGATCGACTGCATGGCGGCCTGGGAGGATTGGCTCCTGGTGGGGACTAAACCAGGTCATCTCCTCCTCTACAGAATCAGGAAGGATGCAGGCACGAACAGATTTGAGGTAACACTGGAGAAATCCAACAAGAACTTCTCCAAGAAGATCCAGCAGCTGTATGTTGTATCCCAGTACAAGATTTTGGTCAGTCTCTTGGagaATAATATCCACGTCCATGACTTGCTCACATTCCAGCAGATCACCGTGGTATCAAAGGCCAAGGGTGCAACGCTCTTTGCCTGTGACCTGCAGCAATCCAATTCAGGTGAAGCAAAGTTGCGGATGTGTGTTGCTGTCAGGAAGAAACTTCAGCTGTACTACTGGAAGGACAGGGAGTTCCATGAATTACAGGGAGATTTTGCAGTTCCTGATATTCCGAAGTCCATGGCTTGGTGCGAGAATTCCTTATGTGTGGGTTTCAAGCGTGACTACTATCTGATCCGGATGGATGGACGTGGCTCAATTAAAGAACTTTTCCCAACAGGGAAGCAACTGGAGCCACTGGTTGCCCCACTGGCTGATGGGAAAGTAGCTGTTGGTCAGGATGACCTCACTGTTGTTTTGAATGAGGAAGGAACCTGCACACAGAAGTGTGCCCTCAACTGGACGGACATCCCTGTTGCAATGGAGCACCAGCCTCCGTACATAATAGCTGTGCTGCCGCGGTATGTGGAGATTCGCACCTTTGAACCAAGGTTGTTGGTGCAGAGTGTGGAGTTGCAGAGGCCACGCTTCATCACCTCTGCAGGGCCCAATATTGTGTACGTTGCCAGCAATCATTTTGTCTGGCGACTTGTGCCAGTTTCCATAGCAAGCCAGATTCGGCAGCTCCTACAGGACAAACAGTTTGAGCTGGCTCTTCAGCTAGCAAAGATGAAGGATGATGCAGATGGTGATAAGAAGCAGCAGATTCACCATATTCAGAATTTGTATGCCTTTAATCTCTTCTGTCAGAAGCGTTTTGATGACTCAATGCAGGTGTTTGCTAAGCTGGGGACAGATCCAACTCATGTGATTGGGCTGTATCCAGACCTTCTGCCCTCTGACTACCGTAAACAGCTGCATTACCCCAATCCTTTGCCCACCCTTTCTGGAGTGGAGCTGGAGAAGGCCCACCTGGCTCTCATTGACTACCTAACCCAgaAGCGCAGTCATTTGGTGAAGCAGCTGAATGACTCTGACCCGTCCACCCCATCGCCGCTTATGGAGGGCACACCTACAATCAAAAGCCGCAAGAAGCTTCTTCAGATCATAGACACCACCCTGCTGAAATGCTACCTCCAAACCAATGTCGCCTTGGTGTCACCCCTTCTGCGTCTAGAAAACAATCACTGTCATGTGGAGGAGAGTGAGTATGTGCTGAAGAAGGCCCACAAGTACAGTGAGCTCATCATCCTCTATGAGAAGAAGGGCTTGCATCAGAAGgCCCTGCAGGTCCTGCTGGATCAGTCCACTAAAGCCAACTCCCCTCTAAAGGGTCATGAGAGGACAGTGCAGTATCTCCAGAGACTGGGGGCAGAGAATCTGGGCGTTATCTTTGAGTTTTCCCCATGGGTGCTGAAGATTTGTCCAGAGGATGGTCTCAAGATTTTTACAGAGGACCTTACGGAAGTAGAAATGCTGCCCAGAGACAAGGTGCTAGACTTCCTGAAGGAGGGTTTTAAGGAGCTAGCTGTGCCATATCTGGAGCACATTATCAGTGTGTGGGAGGAAACGGGCCCCGAGTTCCACAACGTGCTGATCCAGCTCTACCTGGAGAGAGTACAAGCGCTGATGAAAGAGTATCTCAACTCGCTGCCTGAGGGTGTCCAAGCTGTGGCTGCAGGGACGGAGGAAGGAGAACTTGGAAAGTTACGGAACAAGCTGTTGCATTTCCTAGAGAGTTCTAGATGCTATGAGCCAGAGATTCTCATCAGTGACTTCCCATTTGATGGTCTGTTGGAGGAGCGAGCCCTTCTTCTGGGCCGCATGGGAAAACATGAGCAGGCACTCTTCATATATGTGCACACACTGAAAGACACATACATGGCTGAGGAGTATTGTCACAGACATTATGACAAATCAGCAGATGGAAATAAAGATGTGTATCTATCTCTCTTGCGCATGTACCTGTCTCCTCCAGACGCACATTGTCTGGGTCCTATTAAGATGGAGCTGTCTGAGCCCCAGGCTAATCTTCAGGCTGCCCTGCAGGTCCTTGAGCTGCACCATAGCAAGCTCAACACTACTAAGGCGATAAACCTACTTCCAGCGAACACTCAGATCAAAGAGATCCGTGTGTTTCTCGAGAGTGTGTTGGAGGAGAAGGCCCAGAGGAAACGCTTCGACCAGGTGCTCAAGAGTCTGCTGCAGGCTGAGTTCCTCCGGGTCCAAGAAGAGCGAATCTTTCATCAGCAGGTAAAGTGTGTCATTACTGAAGAGAAGACCTGCCGGGTGTGTAAGAAGAAGATTGGAAACAGTGCCTTTGCCAGGTATCCAAATGGTGTGGTGGTCCACTATTTTTGCTGTAAGGATCGCAGTTTGTGTCCCACAGAGCAATGAGATGTCTCAGCTGCATGCACCCGACACACTCCTCCAACTATTCAAGATTTTTACATAAGGCGTTTTGTGCTGCACAACTGAAGGAAATGCCAGTCTGTGTCTTAAAAAAATTTCATAAGGATTTTGGCACAGTAAAGCCACATGTGGTCATGGAGAAATCTTACGGTACCTTGGACTAATGACTTGTTAGCCTTGCACATGGTTATAGATGGAGACATTTTTACGCTGAAGACAAGATTGCTATTGCACTCCGGCTTTGAAGACAATTAAGTcaataaacacatactgtagAATTATGCTTTCTTATGAGAAATAATCATGTCTCTCAtccactgattttatttatttctattattttgaaGCATGTTTCTGTCCAACTTTGTCATATGccttgtgtgtaaaaatgaaaagatacctgtgtgttatgtgttaaaCCTGTCAATGTTATGTTCTAGcccatttacacacagactgtTATGCAGAGACAGCTTGCATGCGGCCTCTGCTTCACTGTATTCGCTTTAGGATGTTCTGGTTGCAGAAGAGAAGCCAGACactaatggattttttttttttctgagtttcTCTCACACTCTGCAATTTTTGTAGTTGTGGTCTGATATATGTTGTAAGTTCATTCTGAGCATAAGAGCGGAGATGTAAATTTTCATGCAAAGTGCGGCAGACCCTTTTTGAGTCTCTACATTAACAGGCTTAATAACGAAGGCATTAGTTCTGTGATTACAGCAGCATGGCACTTTTTTGGCTTCTACTTGGCTTTAATTTATTCTCTCTAATGGATGATGCAAGAAAATAAAGCACTAATAATTAAAGTGGATCATTACACATTGATGTTGCTATAAATGTCGATAATCTCACATGTGGAAAGGAGTCTTTTGGGGGTACCAGCACTCTTGCTTGTTAAAATTTGTGCTTGAATgtgttaaatttaatttatcacCATCTTCAGTCATCTCTCTTTCCTCTGTTATTATGATCAACCATGACGTAGACTGTTGCTATTGAGAGGAAAAGATGGTTGCTTTTGTGTTTAAGCAGTGTAACATACGAGGTGTGTTTGAGTTTAAAGAatgtataaattgtattttaaaaatgaatgaggaGATATGTTAATGCTAATAAACATGTATCCTGTCATGTGCAA
>XM_026934014.2
TGACGCAGGTCACGTGCCTGTCGCGCAGCGTGAAGCATCCCGGAAGTTCTGTTTTTTTAGCAAACAGTTAGCTAGTTGGATAACGAACTTTTAACGCTTTATCAGTCTGACAGGTTCTTTTAATATGTGGACACGGTCAGTTAAACCGGAGGCTAACACGGACAACACTGTGTCAAAAATATGGGATGAGATACATTAATTCGCGTAAGCGATGTGTTATAAACAGAGCAGCAGCTTGTTGACAGCGGGGAAGTGGTGTGTTAGGCAGAGAGAGTAGCTAACTCGCGCTGTTTTCGCTTATCGAGTCCCTCTTGGAGGTCTCTCACTTCTTCTAAGCAACCAGGAAACACGGCACGATGGTCTGGACATTAACCACTTGAACTAAAGTCCGCTTCGTTGTGTAATATAGATTATCCAGCTAATtgcacttagctagctagcttgggGATTTACTAGCTTTCCAGTGAGCAGACGCTGACAAAACATAGCTAGTTACATATTTCTTCACAGTTAtatttctttgtaatttttgtGAAGTAATTAAACAGTGTTATATGAGTTGTCATAATGCATGACGCCTACGAGCCCGTGCCTATTTTGGAGAAACTGCCCCTCCAGATCGACTGCATGGCGGCCTGGGAGGATTGGCTCCTGGTGGGGACTAAACCAGGTCATCTCCTCCTCTACAGAATCAGGAAGGATGCAGGCACGAACAGATTTGAGGTAACACTGGAGAAATCCAACAAGAACTTCTCCAAGAAGATCCAGCAGCTGTATGTTGTATCCCAGTACAAGATTTTGGTCAGTCTCTTGGagaATAATATCCACGTCCATGACTTGCTCACATTCCAGCAGATCACCGTGGTATCAAAGGCCAAGGGTGCAACGCTCTTTGCCTGTGACCTGCAGTCCAATTCAGGTGAAGCAAAGTTGCGGATGTGTGTTGCTGTCAGGAAGAAACTTCAGCTGTACTACTGGAAGGACAGGGAGTTCCATGAATTACAGGGAGATTTTGCAGTTCCTGATATTCCGAAGTCCATGGCTTGGTGCGAGAATTCCTTATGTGTGGGTTTCAAGCGTGACTACTATCTGATCCGGATGGATGGACGTGGCTCAATTAAAGAACTTTTCCCAACAGGGAAGCAACTGGAGCCACTGGTTGCCCCACTGGCTGATGGGAAAGTAGCTGTTGGTCAGGATGACCTCACTGTTGTTTTGAATGAGGAAGGAACCTGCACACAGAAGTGTGCCCTCAACTGGACGGACATCCCTGTTGCAATGGAGCACCAGCCTCCGTACATAATAGCTGTGCTGCCGCGGTATGTGGAGATTCGCACCTTTGAACCAAGGTTGTTGGTGCAGAGTGTGGAGTTGCAGAGGCCACGCTTCATCACCTCTGCAGGGCCCAATATTGTGTACGTTGCCAGCAATCATTTTGTCTGGCGACTTGTGCCAGTTTCCATAGCAAGCCAGATTCGGCAGCTCCTACAGGACAAACAGTTTGAGCTGGCTCTTCAGCTAGCAAAGATGAAGGATGATGCAGATGGTGATAAGAAGCAGCAGATTCACCATATTCAGAATTTGTATGCCTTTAATCTCTTCTGTCAGAAGCGTTTTGATGACTCAATGCAGGTGTTTGCTAAGCTGGGGACAGATCCAACTCATGTGATTGGGCTGTATCCAGACCTTCTGCCCTCTGACTACCGTAAACAGCTGCATTACCCCAATCCTTTGCCCACCCTTTCTGGAGTGGAGCTGGAGAAGGCCCACCTGGCTCTCATTGACTACCTAACCCAgaAGCGCAGTCATTTGGTGAAGCAGCTGAATGACTCTGACCCGTCCACCCCATCGCCGCTTATGGAGGGCACACCTACAATCAAAAGCCGCAAGAAGCTTCTTCAGATCATAGACACCACCCTGCTGAAATGCTACCTCCAAACCAATGTCGCCTTGGTGTCACCCCTTCTGCGTCTAGAAAACAATCACTGTCATGTGGAGGAGAGTGAGTATGTGCTGAAGAAGGCCCACAAGTACAGTGAGCTCATCATCCTCTATGAGAAGAAGGGCTTGCATCAGAAGgCCCTGCAGGTCCTGCTGGATCAGTCCACTAAAGCCAACTCCCCTCTAAAGGGTCATGAGAGGACAGTGCAGTATCTCCAGAGACTGGGGGCAGAGAATCTGGGCGTTATCTTTGAGTTTTCCCCATGGGTGCTGAAGATTTGTCCAGAGGATGGTCTCAAGATTTTTACAGAGGACCTTACGGAAGTAGAAATGCTGCCCAGAGACAAGGTGCTAGACTTCCTGAAGGAGGGTTTTAAGGAGCTAGCTGTGCCATATCTGGAGCACATTATCAGTGTGTGGGAGGAAACGGGCCCCGAGTTCCACAACGTGCTGATCCAGCTCTACCTGGAGAGAGTACAAGCGCTGATGAAAGAGTATCTCAACTCGCTGCCTGAGGGTGTCCAAGCTGTGGCTGCAGGGACGGAGGAAGGAGAACTTGGAAAGTTACGGAACAAGCTGTTGCATTTCCTAGAGAGTTCTAGATGCTATGAGCCAGAGATTCTCATCAGTGACTTCCCATTTGATGGTCTGTTGGAGGAGCGAGCCCTTCTTCTGGGCCGCATGGGAAAACATGAGCAGGCACTCTTCATATATGTGCACACACTGAAAGACACATACATGGCTGAGGAGTATTGTCACAGACATTATGACAAATCAGCAGATGGAAATAAAGATGTGTATCTATCTCTCTTGCGCATGTACCTGTCTCCTCCAGACGCACATTGTCTGGGTCCTATTAAGATGGAGCTGTCTGAGCCCCAGGCTAATCTTCAGGCTGCCCTGCAGGTCCTTGAGCTGCACCATAGCAAGCTCAACACTACTAAGGCGATAAACCTACTTCCAGCGAACACTCAGATCAAAGAGATCCGTGTGTTTCTCGAGAGTGTGTTGGAGGAGAAGGCCCAGAGGAAACGCTTCGACCAGGTGCTCAAGAGTCTGCTGCAGGCTGAGTTCCTCCGGGTCCAAGAAGAGCGAATCTTTCATCAGCAGGTAAAGTGTGTCATTACTGAAGAGAAGACCTGCCGGGTGTGTAAGAAGAAGATTGGAAACAGTGCCTTTGCCAGGTATCCAAATGGTGTGGTGGTCCACTATTTTTGCTGTAAGGATCGCAGTTTGTGTCCCACAGAGCAATGAGATGTCTCAGCTGCATGCACCCGACACACTCCTCCAACTATTCAAGATTTTTACATAAGGCGTTTTGTGCTGCACAACTGAAGGAAATGCCAGTCTGTGTCTTAAAAAAATTTCATAAGGATTTTGGCACAGTAAAGCCACATGTGGTCATGGAGAAATCTTACGGTACCTTGGACTAATGACTTGTTAGCCTTGCACATGGTTATAGATGGAGACATTTTTACGCTGAAGACAAGATTGCTATTGCACTCCGGCTTTGAAGACAATTAAGTcaataaacacatactgtagAATTATGCTTTCTTATGAGAAATAATCATGTCTCTCAtccactgattttatttatttctattattttgaaGCATGTTTCTGTCCAACTTTGTCATATGccttgtgtgtaaaaatgaaaagatacctgtgtgttatgtgttaaaCCTGTCAATGTTATGTTCTAGcccatttacacacagactgtTATGCAGAGACAGCTTGCATGCGGCCTCTGCTTCACTGTATTCGCTTTAGGATGTTCTGGTTGCAGAAGAGAAGCCAGACactaatggattttttttttttctgagtttcTCTCACACTCTGCAATTTTTGTAGTTGTGGTCTGATATATGTTGTAAGTTCATTCTGAGCATAAGAGCGGAGATGTAAATTTTCATGCAAAGTGCGGCAGACCCTTTTTGAGTCTCTACATTAACAGGCTTAATAACGAAGGCATTAGTTCTGTGATTACAGCAGCATGGCACTTTTTTGGCTTCTACTTGGCTTTAATTTATTCTCTCTAATGGATGATGCAAGAAAATAAAGCACTAATAATTAAAGTGGATCATTACACATTGATGTTGCTATAAATGTCGATAATCTCACATGTGGAAAGGAGTCTTTTGGGGGTACCAGCACTCTTGCTTGTTAAAATTTGTGCTTGAATgtgttaaatttaatttatcacCATCTTCAGTCATCTCTCTTTCCTCTGTTATTATGATCAACCATGACGTAGACTGTTGCTATTGAGAGGAAAAGATGGTTGCTTTTGTGTTTAAGCAGTGTAACATACGAGGTGTGTTTGAGTTTAAAGAatgtataaattgtattttaaaaatgaatgaggaGATATGTTAATGCTAATAAACATGTATCCTGTCATGTGCAA

Function

symbol description
vps39 Acts upstream of or within developmental pigmentation; eye development; and vesicle-mediated transport. Predicted to be active in cytoplasm and membrane. Is expressed in brain; digestive system; head; and integument. Orthologous to human VPS39 (VPS39 subunit of HOPS complex).

NR:

description
PREDICTED: vam6/Vps39-like protein isoform X1

GO: NA

KEGG:

id description
K20183 VPS39, VAM6; Vam6/Vps39-like protein vacuolar protein sorting-associated protein 39

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026934013.2 True 4363 mRNA 0.45 24 14291331 14305951
XM_026934014.2 False 4360 mRNA 0.45 24 14291331 14305951

Neighbor

gene id symbol gene type direction distance location
galnt16 galnt16,LOC107707671,LOC107687852 coding downstream 5968 14254350 ~ 14285363 (-)
numb numb coding downstream 40531 14202819 ~ 14250800 (-)
ubr1 ubr1 coding downstream 124248 14146901 ~ 14167083 (-)
LOC113538838 NA coding downstream 151896 14135200 ~ 14139435 (-)
LOC117598330 LOC108269659 coding downstream 157241 14130929 ~ 14134090 (-)
LOC113538539 LOC108270105 coding upstream 2644 14308595 ~ 14318114 (-)
ralgapa2 ralgapa2,LOC107687934 coding upstream 163743 14469694 ~ 14569098 (-)
nkx2.4a nkx2.4a,nkx2-4,LOC108269668,LOC108428605,LOC107707661,LOC107558479,LOC107737279,LOC107688185 coding upstream 391757 14697708 ~ 14702272 (-)
foxa2 foxa2 coding upstream 569772 14875723 ~ 14878332 (-)
prkd3 prkd3,LOC108270251,LOC108435798,LOC105909481,LOC101070414 coding upstream 583855 14889806 ~ 14930375 (-)
G165452 NA non-coding downstream 50328 14192997 ~ 14241003 (-)
G165352 erh,ERH,LOC106607637 non-coding downstream 113655 14172660 ~ 14177676 (-)
G165261 NA non-coding downstream 407472 13883517 ~ 13883859 (-)
G165242 NA non-coding downstream 431666 13859197 ~ 13859665 (-)
G165233 NA non-coding downstream 449844 13841271 ~ 13841487 (-)
G165494 LOC108270031,LOC108428624 non-coding upstream 102842 14408793 ~ 14412667 (-)
G165581 NA non-coding upstream 341248 14647199 ~ 14648296 (-)
G165721 NA non-coding upstream 554098 14860049 ~ 14860606 (-)
LOC113538627 NA non-coding upstream 556203 14862154 ~ 14874192 (-)
G165856 NA non-coding upstream 635750 14941701 ~ 14942043 (-)
exd2 exd2,LOC107558452 other downstream 90534 14190691 ~ 14200797 (-)
G165451 LOC108269968 other downstream 100846 14188238 ~ 14190485 (-)
trnal-uaa_1 NA other downstream 435539 13855388 ~ 13855792 (-)
tbpl2 tbpl2,LOC107729258,LOC107693101,LOC107586674 other downstream 1204869 13079534 ~ 13086462 (-)
timm9 timm9,LOC107729247,LOC107693171,LOC107689314 other downstream 1385729 12903776 ~ 12905602 (-)
nkx2.2a nkx2-2,nkx2.2a,LOC107558480,LOC107707659,LOC107737280,LOC108435751 other upstream 421182 14727133 ~ 14772881 (-)
nenf nenf other upstream 773745 15079696 ~ 15082205 (-)
capn3a capn3,LOC108269768,LOC108435782 other upstream 801169 15107120 ~ 15117364 (-)
pgfb pgf,LOC108435746 other upstream 997284 15303235 ~ 15322051 (-)
ktn1 ktn1,LOC107668535 other upstream 1327051 15633002 ~ 15663495 (-)

Expression


Co-expression Network