G165452


Basic Information

Item Value
gene id G165452
gene name NA
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047604.1
NCBI id CM018550.1
chromosome length 29376037
location 14192997 ~ 14241003 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU195859
TTTGAATACCGGGTTAATTGTTTGAGGTGCCGAAGTTGGAATACTGAAATCACTACTCAGGTATTTGTTATGCTCCGTGTCTCCATGAAGTCGGTGAGAAAATATGAAACGGAGAGGCTGCGGCTGTTATGTGATGAGCTCCGCTGTCATGGTGTGCATcagaatcattaaaaaaaaaaaaaaaaacaggagtgcTTTTATGTGGGTAGACATGGAAAAAGAGTTAGGTACATTTTACACCAGAAGCCATGCTGCAGGCGTGGAGCATTCATTCTGTGTTTTCATTCACtggtttaataaatataacGTGGAAATATCTGTACTGATGTTAAGATCATTATAAACACGCAGTGCCATGGTGATTATATAAACCTTGTTAAACCGGTGAGGTTTTCCAGCATCCCTCCAACCCACAAATATCCGAGTGCTTGTATCCTTTTAGTGGcaattataacttttttttttttttttttttttttgcaaactctaatctggtcttgCTGTTTTTGAGGCAAACCAATGTTTACATCTTG

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU195859 True 533 lncRNA 0.38 2 14192997 14241003

Neighbor

gene id symbol gene type direction distance location
ubr1 ubr1 coding downstream 25914 14146901 ~ 14167083 (-)
LOC113538838 NA coding downstream 53562 14135200 ~ 14139435 (-)
LOC117598330 LOC108269659 coding downstream 58907 14130929 ~ 14134090 (-)
LOC113538826 tmem179,LOC107679825,LOC107569011,LOC107732500,LOC100537383,LOC107758559 coding downstream 66518 14122964 ~ 14126479 (-)
arf6b arf6,arf6a,arf6.2,ARF6,LOC105893149,LOC106608083 coding downstream 337984 13852304 ~ 13855013 (-)
galnt16 galnt16,LOC107707671,LOC107687852 coding upstream 13347 14254350 ~ 14285363 (-)
vps39 vps39 coding upstream 50328 14291331 ~ 14305951 (-)
LOC113538539 LOC108270105 coding upstream 67592 14308595 ~ 14318114 (-)
ralgapa2 ralgapa2,LOC107687934 coding upstream 228691 14469694 ~ 14569098 (-)
nkx2.4a nkx2.4a,nkx2-4,LOC108269668,LOC108428605,LOC107707661,LOC107558479,LOC107737279,LOC107688185 coding upstream 456705 14697708 ~ 14702272 (-)
G165352 erh,ERH,LOC106607637 non-coding downstream 15321 14172660 ~ 14177676 (-)
G165261 NA non-coding downstream 309138 13883517 ~ 13883859 (-)
G165242 NA non-coding downstream 333332 13859197 ~ 13859665 (-)
G165233 NA non-coding downstream 351510 13841271 ~ 13841487 (-)
G165232 NA non-coding downstream 351818 13840965 ~ 13841179 (-)
G165494 LOC108270031,LOC108428624 non-coding upstream 167790 14408793 ~ 14412667 (-)
G165581 NA non-coding upstream 406196 14647199 ~ 14648296 (-)
G165721 NA non-coding upstream 619046 14860049 ~ 14860606 (-)
LOC113538627 NA non-coding upstream 621151 14862154 ~ 14874192 (-)
G165856 NA non-coding upstream 700698 14941701 ~ 14942043 (-)
G165451 LOC108269968 other downstream 2512 14188238 ~ 14190485 (-)
trnal-uaa_1 NA other downstream 337205 13855388 ~ 13855792 (-)
tbpl2 tbpl2,LOC107729258,LOC107693101,LOC107586674 other downstream 1106535 13079534 ~ 13086462 (-)
timm9 timm9,LOC107729247,LOC107693171,LOC107689314 other downstream 1287395 12903776 ~ 12905602 (-)
fzd3b LOC108270052,LOC108428681,LOC107665105,LOC107729283,LOC107589599 other downstream 1379333 12791829 ~ 12813664 (-)
nkx2.2a nkx2-2,nkx2.2a,LOC107558480,LOC107707659,LOC107737280,LOC108435751 other upstream 486130 14727133 ~ 14772881 (-)
nenf nenf other upstream 838693 15079696 ~ 15082205 (-)
capn3a capn3,LOC108269768,LOC108435782 other upstream 866117 15107120 ~ 15117364 (-)
pgfb pgf,LOC108435746 other upstream 1062232 15303235 ~ 15322051 (-)
ktn1 ktn1,LOC107668535 other upstream 1391999 15633002 ~ 15663495 (-)

Expression


Co-expression Network