RNA id: TU195855


Basic Information

Item Value
RNA id TU195855
length 1483
lncRNA type sense_over
GC content 0.40
exon number 2
gene id exd2
representative False

Chromosome Information

Item Value
chromosome id NC_047604.1
NCBI id CM018550.1
chromosome length 29376037
location 14190691 ~ 14200797 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

AGGTGAAGCTCTGCCAGGCCTtaactgcagctgtcttcagttcgtGCTGGTTCTTGGGAATTTTGCCTTCAGGTTTACCTTCAGCAGATGAAATGCATGCTCTGTTGGATTCACGTCAggatctTTAATGAGAGCTACGTGCCACATGGGCTGAAGGTGGTACAGGCATACGCTGAGCGAGGACTGCGCGGTCTGATTGAGTTGGAGCGACGCTGGCGTCAGCACTTCCTGTCCTGCATGCAGCCCAAATTCCTACCTCCACTGTGGTCTGTCGACCATAACCATGAGAAATACCTGCGCAAGTATGGAGAGAACCTGCTCATTAATCTGACCTGagcacacattccacagaggTAGGCAGAGGCAGTTTGAGCAAGACCCAGACGGCTTAATCCCGAACCCGTGTTGGTGTGTCAGTGTATTTCTAAGAGATGAACTTGTCCTGATCTGATATTGACTCCTATATGAAGTGAGCCTAACACGTGTTCTAAGACTGTAGATGAACTGGGAGAGACCAACCACAGGCTCTTGATTGTGGGCTCACTGTGATGAGTTAAAAGGGATGATGAGAGTAAAAAAGGTGCAGGAACTAAAATGATGAAACACATTGTATGTACGACATAAAGTGGGAGAACAGTTCTCAGCTTTCCATAAAATGAAACTTGTATATTTTTAACAGCCCAAACCTGCTCTtgatttcttaaaataaaaaaaaaaatataaaatatatatatgtataggtTAAAATTGTTGCAGGTTTGAGGTcctattaaatattttgtataattgTGTGGTAAATCTAGGGTTTTGCAATATGGGGCTGTtgacagtatttattttttacgtGTTTTCACTCCTCATATTTCTATAATTGCGATTATGCTCTTCAGCGTATGTTGGTCTTTTATGATGGACTTGACATGACTGTAAACTTTACACCTTAAAATGATTAACTCATTTCCGTTTGTTAGAACTTTTTAGCCTCTGAGacatgaacatttatttatttagcatatgTTTGGGGAGGATGTGGACACCTTGTTTCTGTACGTTTTCCAAATTTCCAAACATCAGTCAGGACACCTCAATGTGTACGTTTAGTGCACCTTTTCCCCCTGACTGCCTTGATTTGGTGTATAGCTCATGACAGTAACATTGAGTGGCATCTAAAGTTCACCCTTTAACAACCTGAGAGACAGCTCCATTAGCAATAATGAGTAATTATAATTCTCATAATCATGGTCTTTGCAAATGAGATTTCCACATTTGAGCATGcagaatttaattaaagaaactacagcttttttcttttatttacatttgtccaGATGTAACCTCATAAAAGCTGTTATGTTTCcttaaattgttattaaaatatatatttaatgttaagaTGTCTCTGTGAGGTGCTGGTGAAAAATGTTGTAAGGAATGAGCCCTGCTCATATCCtacactgtttaaaaacacGCGTTACACAAGCAT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU195858 lncRNA downstream 206 14189892 ~ 14190485 (-) False G165451
TU195856 lncRNA downstream 206 14190021 ~ 14190485 (-) False G165451
TU195742 lncRNA downstream 13015 14172660 ~ 14177676 (-) True G165352
TU195623 lncRNA downstream 306832 13883517 ~ 13883859 (-) True G165261
TU195601 lncRNA downstream 331026 13859197 ~ 13859665 (-) True G165242
TU195921 lncRNA upstream 215222 14408793 ~ 14412667 (-) True G165494
TU196048 lncRNA upstream 453628 14647199 ~ 14648296 (-) True G165581
TU196201 lncRNA upstream 666478 14860049 ~ 14860606 (-) True G165721
XR_003403867.2 lncRNA upstream 668583 14862154 ~ 14874192 (-) True LOC113538627
TU196200 lncRNA upstream 668615 14862186 ~ 14874133 (-) False LOC113538627
XM_026933926.2 mRNA downstream 23608 14146901 ~ 14167083 (-) False ubr1
XM_026933925.2 mRNA downstream 23608 14146901 ~ 14167083 (-) True ubr1
XM_034308027.1 mRNA downstream 51256 14135200 ~ 14139435 (-) True LOC113538838
XM_034308272.1 mRNA downstream 56601 14130929 ~ 14134090 (-) True LOC117598330
XM_026934231.2 mRNA downstream 64212 14122964 ~ 14126479 (-) True LOC113538826
XM_026933890.2 mRNA upstream 9248 14202819 ~ 14250800 (-) False numb
XM_026933889.2 mRNA upstream 9248 14202819 ~ 14250800 (-) True numb
XM_026934552.2 mRNA upstream 60779 14254350 ~ 14285363 (-) True galnt16
XM_026934014.2 mRNA upstream 97760 14291331 ~ 14305951 (-) False vps39
XM_026934013.2 mRNA upstream 97760 14291331 ~ 14305951 (-) True vps39
TU195857 other downstream 206 14188238 ~ 14190485 (-) True G165451
trnal-uaa_1 other downstream 334999 13855610 ~ 13855692 (-) False trnal-uaa_1
TU194859 other downstream 1285108 12903788 ~ 12905583 (-) False timm9
XR_003403883.2 other downstream 1377027 12791829 ~ 12813664 (-) False fzd3b
trnal-cag_11 other downstream 1970019 12220590 ~ 12220672 (-) False trnal-cag_11
TU196126 other upstream 533633 14727204 ~ 14729021 (-) False nkx2.2a
TU196128 other upstream 533633 14727204 ~ 14733850 (-) False nkx2.2a
XR_004578922.1 other upstream 916023 15109594 ~ 15117364 (-) False capn3a
TU196803 other upstream 1111052 15304623 ~ 15322004 (-) False pgfb
XR_003403862.2 other upstream 1441515 15635086 ~ 15663495 (-) False ktn1

Expression Profile