RNA id: XM_034307985.1


Basic Information

Item Value
RNA id XM_034307985.1
length 2202
RNA type mRNA
GC content 0.53
exon number 13
gene id khdc4
representative False

Chromosome Information

Item Value
chromosome id NC_047595.1
NCBI id CM018541.1
chromosome length 35600603
location 7370 ~ 21283 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

GTATGAGAGGCGGCACAGTGTGTtttggtggaggtggaggaggaggaggtgtttTTACTGCAGAGGAGTTGAATTAAACTTACAGATTGATGTCGTTTGGTGAAACTCAGAACAGCGGGCGGCGTAGTAAATGGGACCAGGCTGCTCCATCCTCTGGCGCTCTGGATGCTGCTGCTGCCGTTGCTGCCAAAATTAACGCCATGCTGGTGGCTAAAGGCAAACTGAACCCAGCAcagatcagcacacacacacccggggACAcggcTGCAGTAGGAGGGGCTAAGAGCTCGGTGAAAGCGAGGGATGACCTGGTGGTGGCTGAGGTGGAGATAAACGATGTGCCGCTGACTTGCAGGAATCTGCTGACCCGAGGACAAACGCAGGATGAGATCAGCAGGGTGAGTGGGGCAGCCGTGTCCACCAGAGGGCGCTACATGACTGCAGAGGAGAAGAATAAAGCTCTGCCCAGCGACCGTCCACTCTACCTCCATGTCCAAGGCCAAACCAGAGAGCTTGTGGACAaggcTGTAAACAGGATTAAGGAGCTCATCACTAATGGAGTGGTTAAAGCAGCAGTATCTCAGCCCCCTCCCTCTATGCTACCTCCCGCAGGACCCAAACCTCACTGCACTGggGTGAAGGTGTTTGTGGGATTGGACCATGCTCTTCCTGGTTTCTCAGTGAAGGAGCGGGTGGAGGGACCGAACTGTTCTTACCTACAGCACATTCAGAACGAGACGGGGGCCAAGCTCTTCCTgcggggtcaaaggtcaggctGCATTGAGCCAGCGTCGGGGAGAGAGGCCTTTGAGCCCATGCACATCTATATCAGTCACCCCAAACCAGAGGGTATCACTGCCGCTAAGACCCTGTGTGAGAACCTGCTGCAGACAgTACATGCAGAGTATTCTCGCTACCTGAGTGAGATGAGTGCTGTGATGCCCACACAAGGTTTTCTCCCCCCTCCTGGGGTAAATGGTATGCCCCAGTATTACCCTCCTACTGTACCCCCTGCGGCCCCGGTGCCCACTCATTACCCCCTTCCCCCTCCGACAGTAGTGCCCACTGCAGCACCAGAGCCCACAGTGCCCCCTACTGCCCcttaccacatcacacaccctctcacGACTAATCTCACACAGCCCCTCCCACCAGAAGTGTACCCACTTGTAGCTCCACCCCAACATATGAATCCATCCCCAGTCAAACCTGCGGCTCCACCTCATTCCAAGCCTGTGGCTCAGACAAAATCAGTGGCTCCGGCTCCTGCTCAGAAACGGCGCTTCACTGAGGAAGTGCCTGAGGAGAATGATAACGGCCTGCTGGGATACCAGCATGGACCCATTCATGTGACTAATTTAGGTTCAGGCTTCTCAGTGGGCAGCCCCGAGACTGCAGGACCCCAACATGGCATTTCTACTTCCCGTggggagagacaggagagagacagGCAGATGATGCCCCCTCTACCCCCACCACTGAGCAGTGGAATGAGAGAGCAGAAAAGTGAGGAGAGACCACACAGCTCCCtggctcctcaGGTAAAGCGCATCAGGACGGGGTTGGTATCGTACTCTGGCGATTCTtctgatgaagaggaggagcttGTGTCTCTGAAAGTGGGTGAGGCCAGTGTGGTTGGCTCCTCCCCTTCAACATGGACTGCTGGGACATACAGATGCCCTGCCCCCTCTCAGCCACACCCCAAAACACAGACCACACAATCAATGCCTTTCTGGATGGCGCCATGAGAGGGaggtctaacacacacacacacacacacacacacacacacacacacacacagatatcgCCTTTGTGTGACAAGCATTCACTGGGCGGAGCTTAATTTGTTTCATCAGCCAAATCGTAAACTTAATCATGTGACATTGTTagtagcttttcttttttccagatATATTAACACAGTAGTGTACTAGCACTAGCCAGCTAACTCATTTGCGATTGGTTGATCAAATGTAAGAACGCAGCTCCACCTTTGTCGACCCAAAGACACCTGTTACATGGCAACAtcattacaccacacacacttgcacacacttcTGTTCCTCTCTGCCCATATGCTTACAGTGAGCAGGCAAACTGATTCATCGatgtgacaggaagtgatgtataGGTATAATATAATGAACTGGACAACAGTGTGAGTGTTTATTTCTCAGAATAAACTGCTTTATCTTA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU227 lncRNA upstream 110080 131363 ~ 186847 (-) False spag1b
TU246 lncRNA upstream 192011 213294 ~ 214675 (-) True G187
XR_004578583.1 lncRNA upstream 225849 247132 ~ 248138 (-) True LOC117597821
XR_004578584.1 lncRNA upstream 226983 248266 ~ 252164 (-) True LOC117597824
TU255 lncRNA upstream 269554 290837 ~ 295782 (-) True G190
XM_034307865.1 mRNA upstream 301 21584 ~ 55153 (-) False zbtb7b
XM_034307863.1 mRNA upstream 301 21584 ~ 30484 (-) True zbtb7b
XM_026911998.2 mRNA upstream 37009 58292 ~ 85245 (-) False LOC113525472
XM_026911997.2 mRNA upstream 37009 58292 ~ 85245 (-) True LOC113525472
XM_026912001.2 mRNA upstream 65164 86447 ~ 95078 (-) True pklr
TU197 other upstream 4311 25594 ~ 55086 (-) False zbtb7b
TU214 other upstream 116091 137374 ~ 138844 (-) False spag1b
TU237 other upstream 137519 158802 ~ 162066 (-) False ptpn6
TU238 other upstream 137519 158802 ~ 166069 (-) True ptpn6
TU694 other upstream 577498 598781 ~ 599166 (-) True G502

Expression Profile