RNA id: TU255


Basic Information

Item Value
RNA id TU255
length 385
lncRNA type inter_gene
GC content 0.45
exon number 3
gene id G190
representative True

Chromosome Information

Item Value
chromosome id NC_047595.1
NCBI id CM018541.1
chromosome length 35600603
location 290837 ~ 295782 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

AGTAatagtgggcggggcttgtagTGTCTCAGGCAGCGGTTTTCttgcagatatatatatatattttttcctgcaAAGTCTcctaaaacaaaagcaaacatcaataaagaaataaagaagctCGGATCCGAGTCACATCCCGTCATTAGCGCTAACACTGTGAGGAGGAGAGTTTTAACCACAGCGCCGCGGCTTCAGGgagtgaggagcTCCAGTCCAGCATGGAGCAGGCAGAGGATCAGAGCAGCTCGGGttcctccagcagcagcagtacaGGCTCCGGGGGAAACGCTCGGCCTGCGCAGATCTCTCAGATGTCTCTGTACGAACGACAGGCTGTACAGgctctGCAGGCTCTACAGCGACAGCCTAACGCAGCTCAGTA

Function

GO:

id name namespace
GO:0006396 RNA processing biological_process
GO:0044424 obsolete intracellular part cellular_component
GO:0005634 nucleus cellular_component

KEGG:

id description
ko03040 Spliceosome

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
XR_004578584.1 lncRNA downstream 38673 248266 ~ 252164 (-) True LOC117597824
XR_004578583.1 lncRNA downstream 42699 247132 ~ 248138 (-) True LOC117597821
TU246 lncRNA downstream 76162 213294 ~ 214675 (-) True G187
TU227 lncRNA downstream 103990 131363 ~ 186847 (-) False spag1b
TU25 lncRNA downstream 276797 13277 ~ 14040 (-) True G21
XR_004579077.1 lncRNA upstream 14682 310464 ~ 329128 (-) True LOC117598405
TU257 lncRNA upstream 34054 329836 ~ 330144 (-) True G191
TU267 lncRNA upstream 40079 335861 ~ 336232 (-) True G200
XR_004579565.1 lncRNA upstream 132641 428423 ~ 455024 (-) False LOC113526720
XR_004579563.1 lncRNA upstream 132641 428423 ~ 455024 (-) True LOC113526720
XM_034306088.1 mRNA downstream 81600 198652 ~ 209237 (-) True wnt4b
XM_034306083.1 mRNA downstream 95260 166197 ~ 195577 (-) False chd4b
XM_026911618.2 mRNA upstream 34656 330438 ~ 333931 (-) True rps9
XM_026914011.2 mRNA upstream 223788 519570 ~ 523775 (-) True LOC113526714
XM_026914015.2 mRNA upstream 235162 530944 ~ 540579 (-) True mal2
XM_026914013.2 mRNA upstream 246886 542668 ~ 552787 (-) True colec10
XM_026914137.2 mRNA upstream 518753 814535 ~ 830355 (-) False sh3d21
TU238 other downstream 124768 158802 ~ 166069 (-) True ptpn6
TU237 other downstream 128771 158802 ~ 162066 (-) False ptpn6
TU214 other downstream 151993 137374 ~ 138844 (-) False spag1b
TU197 other downstream 235751 25594 ~ 55086 (-) False zbtb7b
XR_004578951.1 other downstream 269554 7972 ~ 21283 (-) False khdc4
TU694 other upstream 302999 598781 ~ 599166 (-) True G502
XR_004578099.1 other upstream 381619 677401 ~ 677800 (-) True LOC117597201
XR_004578455.1 other upstream 2145064 2440846 ~ 2451520 (-) False hint3
TU1883 other upstream 2622546 2918328 ~ 2919811 (-) False eny2
TU2085 other upstream 2948053 3243835 ~ 3281162 (-) True G1718

Expression Profile