RNA id: TU93484


Basic Information

Item Value
RNA id TU93484
length 229
lncRNA type inter_gene
GC content 0.47
exon number 1
gene id G78768
representative True

Chromosome Information

Item Value
chromosome id NC_047599.1
NCBI id CM018545.1
chromosome length 32114633
location 8046040 ~ 8046268 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

ggAAATGGGACCCGGCCGAGGAGGAGTGATGGAGACAAGAAGAAAGCAAGTTGGAGGGCAAGTAACGTTAGCTGAAGTGGAGACAAGAGGATACAGTAGGCTAGCTAGCGAAGCTAATCCTGCTAGCATCGCGAGTGAGAATCGGCGTCCGCTTGGACCGCGGTGAAATAGCCTTCATTTCTGactgaaaattattttaaaattagaggacctcttttaaaaaatctgg

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU93482 lncRNA downstream 504 8045135 ~ 8045536 (-) True G78766
TU93475 lncRNA downstream 29634 8015940 ~ 8016406 (-) True G78759
TU93464 lncRNA downstream 62154 7983541 ~ 7983886 (-) True G78750
TU93365 lncRNA downstream 162752 7823288 ~ 7883288 (-) True G78653
TU93320 lncRNA downstream 297988 7747843 ~ 7748052 (-) True G78627
TU93620 lncRNA upstream 148924 8195192 ~ 8195477 (-) True G78872
TU93744 lncRNA upstream 206608 8252876 ~ 8297126 (-) False G78965
TU93751 lncRNA upstream 206608 8252876 ~ 8297126 (-) False G78965
TU93752 lncRNA upstream 206608 8252876 ~ 8297126 (-) True G78965
TU93784 lncRNA upstream 246490 8292758 ~ 8303999 (-) True G78991
XM_026947128.2 mRNA downstream 15742 8026008 ~ 8030298 (-) True spryd7b
XM_026947283.2 mRNA downstream 22835 8016869 ~ 8023205 (-) True gtpbp8
XM_026947218.2 mRNA downstream 48156 7992899 ~ 7997884 (-) True slc10a2
XM_026947194.2 mRNA downstream 242453 7792959 ~ 7803587 (-) True lcmt2
XM_026947224.2 mRNA downstream 262758 7776466 ~ 7783282 (-) True rab5b
XM_026947169.2 mRNA upstream 26331 8072599 ~ 8075406 (-) True LOC113547016
XM_026947230.2 mRNA upstream 35468 8081736 ~ 8085066 (-) True LOC113547047
XM_034304718.1 mRNA upstream 41352 8087620 ~ 8091944 (-) True LOC113547048
XM_026913239.2 mRNA upstream 149672 8195940 ~ 8210153 (-) True srpx
XM_026913240.2 mRNA upstream 149672 8195940 ~ 8210110 (-) False srpx
TU93319 other downstream 298402 7744726 ~ 7747638 (-) True G78626
TU92785 other downstream 999231 7043787 ~ 7046809 (-) True G78159
TU92652 other downstream 1481003 6529046 ~ 6565037 (-) False G78058
TU92645 other downstream 1481469 6529046 ~ 6564571 (-) False G78058
TU94039 other upstream 618422 8664690 ~ 8665579 (-) True G79221
TU94195 other upstream 725198 8771466 ~ 8772429 (-) True G79349
TU94190 other upstream 811551 8857819 ~ 8859399 (-) False LOC117597331
TU94246 other upstream 950515 8996783 ~ 9019448 (-) True G79388
TU94713 other upstream 1482036 9528304 ~ 9531668 (-) False LOC113525856

Expression Profile