RNA id: XM_026910834.2


Basic Information

Item Value
RNA id XM_026910834.2
length 2073
RNA type mRNA
GC content 0.46
exon number 3
gene id sfrp2
representative True

Chromosome Information

Item Value
chromosome id NC_047599.1
NCBI id CM018545.1
chromosome length 32114633
location 4290072 ~ 4294136 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

TTAACTGACCAGGGTTAGCGCTTGGGTCTTGCTCTCCAcccctcttcacacacacacacacacacacacacacacacacacacacacacacacgcacaaagtGAGCGCTTCACGTGCAGTTTTAGTTTCTCTTCAGAGGAAACCGACACCTGATTGGAGTTTTCTGTCCCGCGTGCAGCCTCACATCTCTAACCCGCTATACGCGCCACGATGCACTCGCTTCTGCCCGCGGTACTCGCGTGCGCCGTGCACTTTGCGCTCGGGATGTACGGCTTCGACCATGCTGAACTCTCTCCGCACCGGAGCAGCTGCAGACCGATTCCTCGGACCCTGTACCTGTGCCGCGGCATCGAATACGCGCGCATGCGTCTGCCCAATCTGCTCGGGCACGAGACTATGAGCGAGGCGGCGCAACAGGCTGCCGCCTGGGTACCTCTTGTGCACAAGCGCTGCCACACCGACACGCGCAAGTTCCTGTGCTCGCTCTTCGCGCCCGTGTGCCTCGAGGATTTGGACGAGCCGATCCAGCCGTGCCGCTCGCTCTGCGAGGGAGTCAGGAGCGCGTGCGCCCCCGTTATGGCCGCTTTTGGTTTTCCGTGGCCCGGCATGCTTGACTGCGCTCGATTCCCGGATGACAACGACCTGTGCATACCTCCCGCGGGCGCGGACACCGACACCGCGGGGCCGGTCACACAAGGAGTACCAAAGGTGTGTAATGCCTGCACAGAGAAGATGGAGGATGACAATGAAATTGTGGACAGTCTTTGCAAAAATGATTTTGTTCTGAAAATTAAGGTGAAGGAGATCTCCTACATGAACGGAGACACGAAGATCATTCCTGAAACCAAGAGCAAGACCATATACAAGTTGAATGGAGTGACAGAGCGTGAGCTGAGGAAGGCGCCTCTGTGGCTTAGAGATGGTCTGGAGTGCATGTGTGATGAGATGAGTGACATCAATGCCACCTACCTGGTGATGGGCCAGAATCTGGACGGGAACCTGGTGATCACAACACTGAAGCGCTGGCAGAAAGGACAGCGTGAGATTAAGCGCCTCTACCGCAGCATCCACAAACTGCAGTGCTGAGCGACGAGGATCTGGCAGCCACAAATCCAGCTCTGTCACAGATCTCCAAATCAACTAGCCACTGTCGTTGTCCTGCTACAGAGCTGTAGTAGTGAAACAAGAAACTTGAATCTAGTCTTTAAATAATCAAGAACTCATATCTGAAagccatgtaaatattttaggtGCAGTGCAGAAAAGTTTCATTGTGTCATATTTCTCCTTTCTATTTAGCTTTAACTCATAATTgcatattctgtttttatatctGTGTGATAGAATTTTCtagaaacacaataaaaacagtcaGAATCCTGATGTCACTCCAGCGGCAATGATTTTATATTCCAGTTTATATATTCCAGTTATATTACAGTTAAGTTGCtaagtgtattttgtgtgtgttttctacaGTGCTTTTTATCAGTATAAAGAGAGATAGCTGGCTATATTCTCATCAGTTTAAACCATAATAAGAGCGATTTCTTTGTTGTTGAAAGCCAGAATTCatgtgtttgagtgtttttcAGTGTCCTCCTGTATGTGAGACTAAAGGCTGCACTGTTTCTGTGTAAATCCCTTAAACCACAATCTGAGATCATctactgtttgtttatttcctgtCTGTCAGTTAGAATATCAGCATGAAGGTCTGTTTCTTGTTGTTCTCTTCTTTGGCTCTGTGAAATCTCACAATCATGGGCTTCGCTCTGGAATTTTTTCTTAATTCAATTGGttgcacattttattgcatTAAGGTTTTGTTTTAATCATTGTGTCCCTTGTTATTGTATAAATATTTCAGGAAGATGTTTGTTCTTGTAGTTTTAGAAGCAGCAGAAAGTCATCGCTTTTCCTTCATTGTTACAACTttgtattaatgtttattttaatgcttattttataGAGCTGTGATGAAATCTGTCACATATGACAAATGAAGAAGCGGAATAAAGACATGCAGAAAGCTTTGTTTGATCTGTTGTACAATTCATATATATGTTCATC

Function

GO:

id name namespace
GO:0060070 canonical Wnt signaling pathway biological_process
GO:0008406 gonad development biological_process
GO:0007420 brain development biological_process
GO:0001944 vasculature development biological_process
GO:0009790 embryo development biological_process
GO:0042995 cell projection cellular_component
GO:0005576 extracellular region cellular_component
GO:0005886 plasma membrane cellular_component
GO:0005737 cytoplasm cellular_component
GO:0030165 PDZ domain binding molecular_function
GO:0042813 Wnt-activated receptor activity molecular_function
GO:0017147 Wnt-protein binding molecular_function

KEGG:

id description
K02176 SFRP2; secreted frizzled-related protein 2

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU91249 lncRNA downstream 4249 4285623 ~ 4285823 (-) True G76860
TU91246 lncRNA downstream 5678 4283553 ~ 4284394 (-) True G76858
TU91240 lncRNA downstream 19727 4265653 ~ 4270345 (-) True G76852
TU91231 lncRNA downstream 47548 4242253 ~ 4242524 (-) True G76845
TU91199 lncRNA downstream 246876 4042934 ~ 4043196 (-) True G76813
TU91297 lncRNA upstream 64608 4358744 ~ 4360934 (-) False G76899
TU91296 lncRNA upstream 64790 4358926 ~ 4361429 (-) True G76899
TU91479 lncRNA upstream 197787 4491923 ~ 4493719 (-) True G77040
TU91549 lncRNA upstream 311169 4605305 ~ 4605679 (-) True G77107
TU91572 lncRNA upstream 344211 4638347 ~ 4638551 (-) True G77130
XM_026936716.2 mRNA downstream 163579 4003726 ~ 4126493 (-) False cntnap5a
XM_026936707.2 mRNA downstream 163579 4003726 ~ 4126493 (-) True cntnap5a
XM_026936728.2 mRNA downstream 366798 3892480 ~ 3923274 (-) True gypc
XM_034304686.1 mRNA downstream 474013 3810514 ~ 3816059 (-) False faima
XM_026934130.2 mRNA downstream 505679 3770234 ~ 3784393 (-) False parp14rs1
XM_034304750.1 mRNA upstream 38759 4332895 ~ 4333842 (-) True LOC113535176
XM_026927891.2 mRNA upstream 119907 4414043 ~ 4469641 (-) True tmem163a
XM_034304391.1 mRNA upstream 211155 4505291 ~ 4515439 (-) False map3k19
XM_034304390.1 mRNA upstream 211155 4505291 ~ 4515439 (-) False map3k19
XM_026928518.2 mRNA upstream 211155 4505291 ~ 4515439 (-) True map3k19
TU90967 other downstream 474036 3813479 ~ 3816036 (-) False faima
trnas-cga other downstream 1350670 2939321 ~ 2939402 (-) True trnas-cga
XR_004578243.1 other downstream 1484209 2802887 ~ 2805863 (-) False LOC113541352
XR_004578242.1 other downstream 1484209 2804548 ~ 2805863 (-) False LOC113541352
TU90190 other downstream 2240687 2049023 ~ 2049385 (-) False LOC113547075
TU91765 other upstream 545824 4839960 ~ 4844879 (-) True G77283
TU92001 other upstream 1037448 5331584 ~ 5339633 (-) False LOC113534947
XR_004578179.1 other upstream 2029017 6323153 ~ 6324680 (-) False LOC117597343
TU92645 other upstream 2234910 6529046 ~ 6564571 (-) False G78058
TU92652 other upstream 2234910 6529046 ~ 6565037 (-) False G78058

Expression Profile