RNA id: XM_034304424.1


Basic Information

Item Value
RNA id XM_034304424.1
length 6079
RNA type mRNA
GC content 0.48
exon number 6
gene id ankrd50l
representative False

Chromosome Information

Item Value
chromosome id NC_047599.1
NCBI id CM018545.1
chromosome length 32114633
location 9160408 ~ 9174609 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

CGATCAAGcgttttaattttatgaatgATTTCAAGCAGCCAGTTCATGTCGATCTGATTGAGTTCTCcagtttgtgcttgtgtgtttatgtgcatggCTGGTAGCTCGTGTAATCCGCCAGGGTCCAGTGTATCTGGATATGGATCAGCCAGTGGTGGAAAGCAGAAAAATTAGAGGATGAACGCTTCCACGTGTCTTTCCTCTAACTTAAAAGTGGAGAACGTTTAGTCGTTTCGTTTATACTAGATAAACTGTATCACTGGTATGTCAGTTTATCCTATTTGTATCCCTATGTTGAATTTTTAGTTGTAAAGATAAGGATGtggaaaatgaaatgtaaatacttGTAGCTCTTGCACATTGTGTCGGATTAGTGATGGTAAATGACGTGTCTGGTGGGCGTGGTTACGACGCACGTGCAGGTATTGCGGATAGGTGCGTCTGGATCCAGGAAGCGAACTGGAGGGGAGGAGATACAGGAGAACAAGAAAAACCGGTGAGCAGCTGTGaggcagagagagtgtgtgaaaggaGAAGAGTCCAGTCATGTCAGCATAACCCCAGAGACCTGGTAGGAGGAAAGAAGGAGACCTGCTGACCTGGTGGaaaccagtttaaaaaaaaagaaattggaaACTGCTTGGAGCACATTAAAAAGGAAGGGAAAATGGATGCTTAGACAGTATCTGTGATCAAGAACCATGACAAACTGAGCCCTAACTAAAGCAGAATTCAAATGCACCTGCAGCCAGACACCATCTGAGGACACATTTTCAAATCTTcattcctggaaaaaaaatttcactatATGAGTTCAACACAATTCAACACTGTGTGATCATCGatacaaatgacaaaaagaTGAACTGAGatatgtttggattttttttcctttggacTATCcattgtgcagtgtgttgtagTATGGAGAAAGGTCCATCCACAGGCCTGACACCTTTTTACTGGGCCAGATGAGGGGCTGCAGGCCAAGTTTGCTGCAGGGCCGGCGATTCCACTGTCGGGAATGGGCCCTGGAGAAGGTGAAGAGATACCTGGAGGCAAGAAATCAGGTCAAAGGGGTGCAGGACTCATCCCATCCCCCATTGGGTGTCTTGGTGATAGGGGGGCCTGGAACAGGTAAGACTGCCTTCTGCACAGAGCTGGTCTGGCCCCAATCAGAAGCAGGAAGAGCATTTGGGCTGGCATCACGGTGTCTGGCTTGGCACTATTGTCAACGGGAAGATGCAGACAGTCTAGAGGTTTGGAGGTTTGTGCTGGGCCTGGTGGAGCAGCTGCGTAAGAGTCCTCTACTGCCAAACTATGGCAACCTGTTGGCCAACCCTGCTATTGCTACCAGCCTAGAGCCTCTTCACTGCCAACGTGACCCAGATGACACCTTTAAAAGGGCAGTTTTGGAGACCCTGCTCTCCTTACCATCTCCATCTCAGAGTGTTTACATAGTGGTAGATTCTCTCGATTCTGGCTATGGTGGGACTGTTGGAGTTGCTGAAGGTCTGACAACAGGGACTACGGGTACTCAGAGTACATCTATAGCGGAGCTTCTCCTCAGGCACCACCAGTATTTGCCACCCTGGATTCTCCTGGTCTGTTCTGCCCGCAGACAGAATAAGGCTGTGTGCAAGATGTTCTCAGGGTTTCGAAAGCTGTGTCTAGATGACTTGCGGAAACCTGTGGCTGTACGGGATGTTCAGCATTATATTCTGCGGAGGCTAGATCAGGAGGGGACACTGCGGCGGCAGCTCACACCAGAGACAGCTGACATGCTTAACTTGCTGCATATCAAGAGTGGTGGCTGCTTTCTCTTCCTTGAGCGAGTGCTGGATGGTGTAGCAAGTGGTTTAGTAGGGCTCAGAGAAATCCGGGACATTCCAGGTACACTTAACGGCCTCTATCTATGGCTCTGTCAGCGGGTTTTCCCCCGTAGACTCTTTGTCCATGTTAGGCCCTTGCTTAACATTATTCTTGCCTCCCCACAACCCCTAAATCTTGAGGAACTCTTCACTGCTGCAAGAACTAGGGATGCTTGCCTGGTACATGAGGACTTTCAGTCACAAATGCATGCTCTGACACCACTGATAGTAGATGGGCCAGAGGGGAGTAAGCTCTTGTTCCATGGTAGTTTTGCAGAGTGGTTAACTGATGTGAAGTACTGTACACAGAAGTTTCTGTGCAGTACTAAAGATGGTCATCTTTCACTTGCCATGTCCCTGTCATTGAGATCTAAAAGCCTTAACACAGAAGGGGTATGCAAAATGGGCCACCACCTCCTCAGCAGTGGAATACATTCAGGTGAGCCAGCACTGCTGGCACTATGGATGCTTTGGACTGGGGTTCCCACTCTTGGCAGTGGTAGGAGGTTcacttctgctgctgtatcTCAACCTCCTTTTCCTCCGCAAACACCTGTGCTGGTTCAACAGGATGTGTTACAGCTTCTGATGAAAAGTGGTGTGTACCCCCCCACCTGTTCCCCAGAGAATGGTCCTAATGTGGGTGTACATTGTGTGGGTAAAGGGAGAGCAATAGTGAGAAGGGCACTGCAAAGAGAGGACTCTGTACGAGCACTTTTGGATAGTGGGGTTAATGTAAACAGGACAGATCCATCAGATGGACGAACTCTGCTCTCTACTGCAGCCCACACAGGGCTTGTAGATATAACTGCACTACTACTGTGTCGTGGAGCAGACCCTTCTCTAAGTGACAACCAGGGACAGACACCACTAACACTTGCAGCCAGGCAGGGCCATGTGGGAGTACTTCAGGTTCTGCTGGACTGGATTCAGGAACAAGGGTGTGAAACTGTTCGAACATTGCTGGAGCATGCAGACAGTGAAGGATGGACTGCTCTGAGAGCAGCCTCATGGGGTGGTCATAAGGAAGCAGTGAGGATGCTTCTAGAGGCAGGAGCAGAGGTAGATGGTTGTGATCCAGAAGGGCGTACTGCTTTACGAGCTGCTGCCTGGGGGGGTCATGAGGAGATCTTGCTGATTCTCCTTGGCCATGGTGCTAAAGTTGATAGCATGGACCATGAAGGCCGTACTCCACTCATCGCTGCTGCCTACATGGGGCATAAGGAGGCAGTAGAGATATTGCTGGATGCTGGAGCAGAAGTGGATCTGGCAGATGGGGATGGACGTACTGCACTCTCAGTGGCTGCGATGTGTGTGCCATCAGCAGCAGGCGGGACAGGACATGGAGAGGTTGTGAGCCTGTTGCTGGAAAGGGGTGCTGATCCAGAGCATAAGGACAAAGATGGGATGACACCTTTACTCCTTGCCTCCTATGAGGGACATGAGGAAGTGGTAGAGCTCCTCTTGGAGGCTGGGGCTGATGTGGATGAGAGTGCTGGAACTTACCCTTCTGCTATCACACCTCTTCTTGCAGCTGCAGCCATGGGCCATGCAGGCACAGTGAACCGCTTGCTATTTTGGGGGGCCGCCGTAGATGGTATTGATGGGGAGGGCCGCACAGCACTCTGCTTAGCTGCCGCTAAGGGCAATGTAGAAGTTGTGCGAGCCCTGCTGGACCGGGGCCTGGATGAGAATCACAAAGATGATTTGGGCTGGACACCCCTTCACACAGCTGCCTGTGAGGGCCACAAGAGTATTTGTATTGTACTCACAGAGCAAGGTAGTATGGCTAGAGTTGGTGAACTGGACGTGGAGGGCCGGACTCCACTCATTCTGGCAGCACAGGAAGGTCACTGCAGTACGGTTAGACTCCTGCTTGACCGTAAATCACCTATTGATCATCGAGGGTATGATGGACACTCTGCCCTCAGTGCAGCTGCCCTGCAAGGGCATGGGGAGGTGGTGGAACTGCTCTTGAGACGGGGAGCTGACAGTGATGTTCGAGATGCAGAAGGAAGACCTCTTCTGTACTTACTAATTCTGGAAGGCTGTTTGGATATAGCCACCTTACTCATAGAGAAAGGGGGTGTTCCACTAGAATCAAGAGATGTAGAGGGCCGTACAGCACTACATGTAGCAGCTTGGCAAGGTGACATAGATGGTATTGAGCTGTTGCTCAAACATGGTGCAGACCCTAATGCATTGGACACAGAGGGTCGACCACCACTGCACTCTGTGGCATGGAGAGGGCACATGGGTGCTGGCAAATTGCTCCTCAGAGCTAGGGGCATAAAAGTTGATCTGGCTTGCAAAAAGCAAGGTGCCACAGCACTCAGTATTGCAGCTCAGGAAGGACACACTGAAATTGTGGCCATGCTTTTGGAAAATGGTGCTCAACCAGACCTTGTGGATCACTATGGCCGCAGTCCAATAAAAGTTGCAGGAAAGAGAGGTAATTTCAGCATTGTTCGCCTACTAGAGAGCTATGGTGCAAAGCCATTCCTTGGACTCCTACCTTCACTCTGTGAAACGCCAGGCTCCTCCCATTCCTCCATACTGAAAACTCAGGTTTCCATCTGCTCTGCAGAGGGGTCTGGAAATGGTGGCCCCGCCACTTCCTCCACCTCATCAAACTCTTTGTCAGCCTCTTGCTCACCTGCTTCTACAGCTGAGAGATTCCATTCAGTGCCTGGTTCTCAGACATCTTCCTCCACATGTCACTCTCTGGCCACGGTGCAGACTGTGCCTGCAGACACCTTAAGCTTCACACAGCAGATTCAGCAGCACTCACTACCCCGCTGCCGCAGTCGGCCATCCACCTTACCTCTACATGGCTCAAACCCTTCTAGCCTACAGAGAAGTACTGCAAGAAACAAGCAGAAAGCAGTTTCCAAAGATAACCCTACCCATGCACAATGCATGATCCTTGGACTACAGGACACACATGTTCCCCTTAAAGGCCTTGGGGCTCTACAAACTGCTGACTACATCTTGAAGCCCAAAACCCCTCACTTAATTGAGAATGAGCTAGATAACAGTCCCCTGAAATTTGGAAGTTGCAAGTGGAACTCAGTAATGTTGTCCCTAGGGTTGACACCAAACCAAGAGGGGGCTATTAGACAGCCAATAAATAGAGACAGTCCACCTTTGGGCTATCCCCCCCTTCATCTTCAGTCCCATGCACAAAAAGAGAGTTGGgatggctttaaaaaaacaatttcccCAACCTTTGACCTCTCAACCATCTCTCCACATGGTGCCTTACTAGAGGAATCTGTGTTCATCACAACCACAGACCCTCAGCTTAACCTCAAACAGGCCATTAAATTGCAGTTTGAGGGGCCAACCAGTGCAGCACTTTACAAGCGGGAAACACCACTCTAAGGCAACCCGTGATAATTAGGAGCTCAAGGAGGAGAGGGTGCTATGGAGAATTGCTGCATATAAGTCACTCAGGGTAGTGGAGAACCGTATATGAGATGAGGCCAGCAGACCAACCACACAATATTGTTTGACTTCCTTAAAAATATTGTGAGGTGGGGTTAAGGAGCAGCAAAGGAGAGGCAAAGAACTAATGGACTTCAAAAGGTCTGTGCTGTGTACTTTCTGGATATTTTTATGGCTAGTCACAATGGACAACTGCTAGCTCCCCCTCACTCAACCACACAATTACAGGAAATATTCttacaaagaaacacaaaatgggAATATGGCTGCTTGCAGGAAAATGTTATTACATATGTGATCAAAGAACACCATAAAACGGAAGGCATGCCTCATATacagtaaagatttttttttatttgcacacaTACAGAAGGGAGTTAAATAGTGGATGTCAAGTGGCCCAAGGCAGAGCTTGCATAGCATATTCATAGTATATTCATAGTACAGTGTGTCTCATAGGTCCAGCATCATAGGGGTCATTTTTAGAAAACATGATATATCTGAACATGGAAGAACAATTACTCATAGCAAATCAAAGATAATATATTGGGACAGTTCTATAATTAAAAGCATTGGTTagctgttttttgtattttttgtatgatGCTGGACGCATGAGACACCCTGTATAACAAAGCACCTTTTAaagcattctttttttcccctttttgcAAAATAATGTGCACAGTGACAGAGAAgaccattcattcatctagaATGCAGCCCAGCATTCTGGTAGTCAAAAGAACACTTGCCAAAAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU94360 lncRNA downstream 1134 9158945 ~ 9159274 (-) True G79488
TU94384 lncRNA downstream 11215 9148897 ~ 9149193 (-) True G79507
TU94366 lncRNA downstream 11761 9100787 ~ 9148647 (-) False cnga4
TU94370 lncRNA downstream 54828 9104665 ~ 9105580 (-) False cnga4
TU94275 lncRNA downstream 116982 9042748 ~ 9043426 (-) True G79414
XR_003402715.2 lncRNA upstream 7473 9181667 ~ 9194123 (-) False LOC113525875
TU94352 lncRNA upstream 17151 9191345 ~ 9195988 (-) True LOC113525875
TU94406 lncRNA upstream 37911 9212105 ~ 9214216 (-) True G79529
TU94427 lncRNA upstream 81194 9255388 ~ 9256891 (-) True G79541
TU94445 lncRNA upstream 120409 9294603 ~ 9294803 (-) True G79553
XM_026913104.2 mRNA downstream 53099 9099536 ~ 9107309 (-) True cnga4
XM_026913011.2 mRNA downstream 73539 9083482 ~ 9086869 (-) True nhlh2
XM_034304200.1 mRNA downstream 83058 9053522 ~ 9077350 (-) False vangl1
XM_026912800.2 mRNA upstream 139990 9314184 ~ 9318165 (-) True rabl3
XM_034304806.1 mRNA upstream 139990 9314184 ~ 9317662 (-) False rabl3
XM_026912336.2 mRNA upstream 258906 9433100 ~ 9491116 (-) True plcl1
XM_026912463.2 mRNA upstream 346535 9520729 ~ 9531671 (-) True LOC113525856
XM_026912461.2 mRNA upstream 346535 9520729 ~ 9526806 (-) False LOC113525856
TU94246 other downstream 140960 8996783 ~ 9019448 (-) True G79388
TU94190 other downstream 301009 8857819 ~ 8859399 (-) False LOC117597331
TU94195 other downstream 387979 8771466 ~ 8772429 (-) True G79349
TU94039 other downstream 494829 8664690 ~ 8665579 (-) True G79221
TU93319 other downstream 1412770 7744726 ~ 7747638 (-) True G78626
TU94713 other upstream 354110 9528304 ~ 9531668 (-) False LOC113525856
TU94711 other upstream 354668 9528862 ~ 9531668 (-) False LOC113525856
TU94712 other upstream 354668 9528862 ~ 9531668 (-) False LOC113525856
TU94755 other upstream 394361 9568555 ~ 9569120 (-) True G79826
TU94731 other upstream 479600 9653794 ~ 9654455 (-) False si:dkey-83m22.7

Expression Profile