RNA id: XM_026928040.2


Basic Information

Item Value
RNA id XM_026928040.2
length 3873
RNA type mRNA
GC content 0.47
exon number 31
gene id mcf2lb
representative True

Chromosome Information

Item Value
chromosome id NC_047599.1
NCBI id CM018545.1
chromosome length 32114633
location 6408161 ~ 6431124 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

TTCCTATGGACTCTACGTGTGTagatctctctcacacacagacacacaatcatACTGTCTCCTCTCTTCCTTGCGCTCTTGTTCCATTTTCCTGTGCATAGCTAGGCAAGACTGCATTGCCAGCAGGTACAACAGGCTGCATTTCTCTCTGCTTTCCTCTTCCCTCTGCATCCCACCCtcctctctcatctctttctccTGCTCTCACGGCTGGAGGATGGCGATGGTCTGGGTGAGCACTAAGAAGGGGGTTGTGCAAGAGCTGCTGCGTAGACTGAGCTATGTCAGTCATAACATTGaTGAGATTATGCAAAAGGAGACGAGTCCAATCTGTGCTGCTGACATCATCCTTGAGCTAAAGAAGAAATTTGCCTTCCTGTCAGGTGGCAGAGGGCAGGATGGCAGCCCTATCATTATCTTTCCAGAATTCCCATCGTTTGGTGAAATCAGTGATCAAGAGTTTCACAATGTTCTCACCTATCTAACAAGTGTTCCCAGtttgaGTGCAGCAGGGGTGGGCTTCATCTTAGTGATTGACAGGCGCCAGGATCGCTGGGCATGTGTGAAAGGGACATTAGTCCGTATCTCGAGTGGCTTCCCAGGAATCCTACGGCTGGTTCTGGTGCTGCGgcctcacacactccttcagcGCACTCtttcagacattttatttaaattccatGGAGATGATTTCAAGATGAAAGTGCCGGTTATCATGTTGAGCTCAGTGGCTGAGCTACATTCGTATATAGACCAAAGTCAGCTGACCCAAGAACTAGGTGGCACTCAGCAATATTGCCATAACACCTGGATCTCCCATCGCACAGACATAGAAGGCTTTGCTGTCTTAGTAAAGAGGATGACACAGAGACTGCAGGTGTTTGGTAGGGAACTGGCAGAGACTGAGCTACCCAACACCCCTCTAGCAACCAGCAATCTGCTCAACGCACACAGCAGCAAGAAAGATAACATGAAGGAGGAGCTGGCGGGAGCTCTGGGTCAAGGGCGTAAGATCTTGGGGAACGTCCGTGAACCAGTGCGCAGGGACCCAGACAGCACTCTAAACCCAGACCAGCTGGAGAACTTGGCCACTGTGCATAGGCTACTGTCTCAGTTAAATGAGAGCTCTGCAGCATTTGATGATTTCTGGCTACAGCATCAGAATAAGCTGGAACTGTGCTTGCAACTCTGCCAGTTTGAGCACAACTTTCAGCAGGTGTCAGCAGAGCTGAAGCTAGCAACTGACAGACTGGCTGCTTTCTCACATGTAGGAATAAGCCAAACCCACACAGAACATCTCCTCAGAGAACTGACTGATCAGGAAGACAAATCATTTGAACTTCTGGACAGAATGGAAGCCCTGGTTATTGAAGGCCAACGTTTCATTGACAGCTGTGAAAATAGTGATGACAATGTCAAAATGAAGTGTGCTGACCTGCAAAATGCCAGAGATAAACTCTTGCAGAAGCTCAAAGCGAAGAGAGGTCAGCTGCTACAGGCCATCGAGCTCCATCAGAAACTGCAGAGTgtgtGTAAATGGTGTGATGATGGTATTTACATGCTGGCATCTCAGCAGCTTGACAAGTGTCAGTCACAGGAGGGGGCGGAGTCCGCACTCCAGGAGCTGGAGGGCTACATGGGGACAGCCAACGAGCTGCAGCagtgggatgtgtgtgtgttctgcagagAGTATGAAAGTATGTTAAACAAAGAGTTGAAGgaACAAGTAGAGCAAGTGTTTGAAAAGAGGGCTTTGCTACAGGAGATGTTTGAGAAAAGGAGGGTCAGTCTAAAGAAGCTAGCAGCCAAACAGACACGCCCGGTCCAGCCTGTAGCCCCAACGCCTGAAGCCATTAAATCACCTCCTTCCTCACCAGCTCTTAGAGACTGTGGGAAGAGCTATGATAGTATAGACTCGCAGAGTGACTATAATGAAGTGTCCTCTGAGCAAAATAATGGAGGCAGCCGTACTGCCTCAGTGTCAGATGAGGAGGAAAACCTGGCTGTACTCCGCAGGCATGTAATGAATGAGCTGCTGGAAACAGAAAGAGCATATGTAGAAGAACTTCTGTGTGTTCTACAGGGCTATGCTGCTGAGATGGACAACCCTGCCATGGCTTCCATCATCCCCGCTGCCCTGCAGAACAAAAAGAATGTGCTGTTTGGCAACATGCAGGAGATCTACTTCTTCCACAAAACGATATTTCTGAGAGAGTTGGAGACTTACACTGATCACCCTGAGCTCGTGGGCCGCTGTTTTCTGGAGAGGATGGGAGACCTGCAGATTTATGAGAAATACTGCCACAATAAACCTCGATCTGAGAGCCTGTGGAGACAGTGCTCAGACTGTGCATTCTTTCagGAATGTCAGAAGAAACTGGAACACAAACTGGGGTTGGACTCTTACCTACTGAAGCCTGTTCAGAGAATTACTAAATACCAACTCCTACTGAAGGAGCTTATTAAGTACAGTAAAGGCTGCGAGGGTGTAGTCGAGCTGCAGGCAGCTCTCTCATCTTTACTGGGCATTCTGAAGGCAGTCAATGATTCAATGCACCTCATTGCAATTAATGGATATGAGGGTAACCTTGGCGACCTGGGCCGGCTGCTGATGCAGGGTTCTTTCAGTGTGTGGGCGGAACATAAGCGTGGCCATGTGAAGATGATGGAGCTGGCACGTTTCAAGCCCATGCAGAGGCACCTGTTCCTACATGAGAAAGCTCTGCTCTTCTGTAAGAGACGTGAGGAAAACGGCGAAGGCTATGAAAAAGCTCCATCGTACAGCTTCAAACAGgagctgagtatgaGTTCCATTGGAATCACTGAACATGCCAAAGGAGACAATAAAAAGTTTGAGAtctggttgagctccagagatgAGGTGTACACTgtgcagGCGGCATCCGAAGAGATTAAGACTATCTGGGTGAGAGAAATCCGGAAACTTCTAACAGGACAGCTGGAGGCCTGCAGGGAAGCTAGCCATCAGAAGACTACTGCTCAATTAACTACAGAGGACAATTCACTTGAAAgACCAGTGAGAGATGGACTGAGTAATATGAATGGAGAAGTGGAGAAACAGAGGACAGAAGAGGAAGGAGGCAAAGAACCCAGCAGCCCAGGTGACAAAAAACCAGAGAGAAAATCGAGTTCATTCTCCGGCTCGGACACCAAACCCAAGCGACAAGATATCAAAAGTGACCCGACGCCTTTAGAAACAGGGTCACACCCCCATTTAAGTGGAGTCAGGTGGTTAAGTACATCGAGCCTGTTTCAGAATCGTAGGAAAGGATGGATTAAAGGTTCTGCCTCATTAGATCCCTCTGTGGAGCATGATGGGTACTTCATCCCTGAAGATCAGGTGACCTCTGAGCCAGAGGAGGAACAAGAAAATAAACTTGACTGTGAGAGCATGAGTGCTGCAGATGAAGAACCCAAAGCGACAGAATCATAGGAAGGACAACCATAAAAAGGTCATAattaaagTGATTCCAAGAGCCTCTGTCCTGGAGAAAAAGAGACCAGACTACTCTTCAAAAAGCACCTGCTGTTCTTCAAATTTTACTCCCTCATACAATATAGCACAAAGTGTCAAACACTTTCATGTGTTACAGTGTTCCTAGCCCTTTAAAGAAAGTGAACTTCCAGTGTGCAGCTGTTATGGTGGTTAAGTCTAATGCTCCTCACATTAAGCATATCTCAGCTTTTTCTTTGCATGAGAACAGCCTTAACTTCCACGTATAATTAGCATATCATATATGCAAATATTGTTTTATGGACGTGCCTGTACTTCCCCTAATGTAaagtctgtatgtctgtctataGTCATAGGATTTTGttcatgtatatgtatatataaaataaaactgaatc

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU92383 lncRNA downstream 80076 6326099 ~ 6328085 (-) True G77840
TU92381 lncRNA downstream 83491 6323043 ~ 6324670 (-) True LOC117597343
TU92334 lncRNA downstream 118150 6289797 ~ 6290011 (-) True G77799
TU92332 lncRNA downstream 126737 6280999 ~ 6281424 (-) True G77797
XR_004578155.1 lncRNA downstream 153011 6253870 ~ 6255150 (-) True LOC117597312
XR_004578288.1 lncRNA upstream 102326 6533450 ~ 6536271 (-) True LOC117597449
TU92638 lncRNA upstream 162017 6593141 ~ 6615660 (-) True G78058
TU92799 lncRNA upstream 646297 7077421 ~ 7107392 (-) True G78172
TU92833 lncRNA upstream 754309 7185433 ~ 7185732 (-) True G78203
TU92894 lncRNA upstream 845695 7276819 ~ 7292595 (-) True G78242
XM_034304748.1 mRNA downstream 154815 6246828 ~ 6253346 (-) False LOC117597406
XM_034304334.1 mRNA downstream 164449 6225854 ~ 6243712 (-) True LOC113534858
XM_034304335.1 mRNA downstream 176969 6228208 ~ 6231192 (-) True LOC117597339
XM_026928149.2 mRNA downstream 926186 5440481 ~ 5481975 (-) False arhgap15
XM_026928148.2 mRNA downstream 926186 5440481 ~ 5481975 (-) True arhgap15
XM_034304921.1 mRNA upstream 20240 6451364 ~ 6708475 (-) True LOC113534875
XM_026927840.2 mRNA upstream 51221 6482345 ~ 6485575 (-) True LOC113534871
XM_026927830.2 mRNA upstream 72705 6503829 ~ 6506790 (-) True LOC113534866
XM_034304923.1 mRNA upstream 97461 6528585 ~ 6532640 (-) True LOC113534867
XM_026927839.2 mRNA upstream 111309 6542433 ~ 6545942 (-) True LOC113534870
XR_004578179.1 other downstream 83481 6323153 ~ 6324680 (-) False LOC117597343
TU92001 other downstream 1068528 5331584 ~ 5339633 (-) False LOC113534947
TU91765 other downstream 1563282 4839960 ~ 4844879 (-) True G77283
TU90967 other downstream 2592125 3813479 ~ 3816036 (-) False faima
trnas-cga other downstream 3468759 2939321 ~ 2939402 (-) True trnas-cga
TU92645 other upstream 97922 6529046 ~ 6564571 (-) False G78058
TU92652 other upstream 97922 6529046 ~ 6565037 (-) False G78058
TU92666 other upstream 112994 6544118 ~ 6545953 (-) False LOC113534870
TU92785 other upstream 612663 7043787 ~ 7046809 (-) True G78159
TU93319 other upstream 1313602 7744726 ~ 7747638 (-) True G78626

Expression Profile