RNA id: XR_003404772.2


Basic Information

Item Value
RNA id XR_003404772.2
length 724
lncRNA type inter_gene
GC content 0.44
exon number 2
gene id LOC113546990
representative True

Chromosome Information

Item Value
chromosome id NC_047599.1
NCBI id CM018545.1
chromosome length 32114633
location 8037299 ~ 8055498 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

TGGTGGGGACTACatttgatacttttttttttttttcaaaccaagGAATACTTCAGTACATTCGCGTTTCTCTTCAAAGGATGGAGTGCTGGAGTCCTGTGGGGAAGCAAAGAAGTGGGAGCGAACAAGAACAGGGGAGTCTCCGTCtttctaggtgtgtgtgtgtgtgtgagagagtgtgtgagagagagacacagggagagagggagaaagagatgCTCTTCAGGTGGTGGTGTAGCAGCACAGAATGGTTTGTGGTGATACAGAGATGCAGGCCGTACTGTGCTGCAGCATCAGTGCTTTGGAAATACACTGCacgtgtgggtgtgggtgtgtgagagagtgtgtgttgtcttGCTTTAGCAGCATGTAAATATTGGAGTTACACCATGGCAGATGTCTCCAGTATGCTCGTGCTGCTGAAGCAAGAAGTCACCAAGCGGCACAAGATCTTTGTCCTGACTGTAGTGTGTTAGCCGTGTTGCTTTGGCTGACTCACCGCTCCTGAAGTCCGTCAGTCGCCCATCCAGCTTCTTCAGCACTGATCACTGATCAAAGGTAAACatggagggaaggagagagagaaaaaagtgatgcaattaaatttttttgttttacaaaattcctgttttgtgtgtgtttctaaaatTATGTTTCTAAATCTTGTTCATGTTGTGTAATGTATTATGCTTGTTTTTCCCTATTAAAAGCTTCTTGAAAACCT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU93475 lncRNA downstream 20893 8015940 ~ 8016406 (-) True G78759
TU93464 lncRNA downstream 53413 7983541 ~ 7983886 (-) True G78750
TU93365 lncRNA downstream 154011 7823288 ~ 7883288 (-) True G78653
TU93320 lncRNA downstream 289247 7747843 ~ 7748052 (-) True G78627
TU93044 lncRNA downstream 422686 7614403 ~ 7614613 (-) True G78364
TU93620 lncRNA upstream 139694 8195192 ~ 8195477 (-) True G78872
TU93744 lncRNA upstream 197378 8252876 ~ 8297126 (-) False G78965
TU93751 lncRNA upstream 197378 8252876 ~ 8297126 (-) False G78965
TU93752 lncRNA upstream 197378 8252876 ~ 8297126 (-) True G78965
TU93784 lncRNA upstream 237260 8292758 ~ 8303999 (-) True G78991
XM_026947128.2 mRNA downstream 7001 8026008 ~ 8030298 (-) True spryd7b
XM_026947283.2 mRNA downstream 14094 8016869 ~ 8023205 (-) True gtpbp8
XM_026947218.2 mRNA downstream 39415 7992899 ~ 7997884 (-) True slc10a2
XM_026947194.2 mRNA downstream 233712 7792959 ~ 7803587 (-) True lcmt2
XM_026947224.2 mRNA downstream 254017 7776466 ~ 7783282 (-) True rab5b
XM_026947169.2 mRNA upstream 17101 8072599 ~ 8075406 (-) True LOC113547016
XM_026947230.2 mRNA upstream 26238 8081736 ~ 8085066 (-) True LOC113547047
XM_034304718.1 mRNA upstream 32122 8087620 ~ 8091944 (-) True LOC113547048
XM_026913239.2 mRNA upstream 140442 8195940 ~ 8210153 (-) True srpx
XM_026913240.2 mRNA upstream 140442 8195940 ~ 8210110 (-) False srpx
TU93319 other downstream 289661 7744726 ~ 7747638 (-) True G78626
TU92785 other downstream 990490 7043787 ~ 7046809 (-) True G78159
TU92652 other downstream 1472262 6529046 ~ 6565037 (-) False G78058
TU92645 other downstream 1472728 6529046 ~ 6564571 (-) False G78058
TU94039 other upstream 609192 8664690 ~ 8665579 (-) True G79221
TU94195 other upstream 715968 8771466 ~ 8772429 (-) True G79349
TU94190 other upstream 802321 8857819 ~ 8859399 (-) False LOC117597331
TU94246 other upstream 941285 8996783 ~ 9019448 (-) True G79388
TU94713 other upstream 1472806 9528304 ~ 9531668 (-) False LOC113525856

Expression Profile