RNA id: TU126140


Basic Information

Item Value
RNA id TU126140
length 1627
lncRNA type intronic
GC content 0.45
exon number 2
gene id G106682
representative True

Chromosome Information

Item Value
chromosome id NC_047600.1
NCBI id CM018546.1
chromosome length 31307711
location 28707899 ~ 28709570 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

TGATGTTCCAAACCAGTGCTCTCATAGCTAACAGTGGAATGTGAGATTTTCTCTATGAATGCTGGTTTATTGCTACAGTTATGCTGAAGAAGATATATATGTAAAGAAATTGTGTGTTTATACCGAAGCTTGAAGGCACATCACTGTATTTTCCATCTGTGGAGAGAGGGGCAACTCGGCCAGGCGGTGGAGGGGAGATAAAGCGTGGAGCCTGTCGcattagagaaataaataaacatttggaaACGGGCAGCTTTCCTCCAACCGCTGTTAAAATGCAGCCTTCATGGCCAAGGCAAGCTTTGTCTGATTCCTGTGGGGTTTGTGCGAGGGAGGAAACAGAGAGTGTGTTCATAGAGGAATCCAGGTAAGAAATCCTGATGAAGTGGGGTTGCACAGCTTATATAAGACAgacagtgggtgtgtgtgtgggaggaggtTGTGTGTGGCATTTGTGCTGTGAAGGATGagactgttttgttgtttactCACTCCCTGATCCAGTAATCTTTCCACTCTGATGCCCTGGAGCTTGGCAAAGCCTTTGGTGGTGCTATGGATGCTCAGCTCTAGAGACTTGACGTCTGAGTAAAGGGATGGGTGACTATATGGGGAGAGATATGGAAGTATGATGGAACATAACGTAAAGCAAGGGTCAGAGGGTTCACTCAGCAGGGAAGCTGCAGAAGAAAGAACTGTGTGCAGCAAGAAATGAGATGATGCATACAGGGAATAGGTAAGGTAGGAATAATCAGGGATAATCTGTGCATTTCTGTTCTAAGCAACCATCCAAACACCAATTGTCCAGCTGTTTGGCTGAGCTGCTAATTTCTGCTCTCTCTGGAAGGGCTTGATTAAGTTATTCCTGAGGCTGACACCAATGACTGAAAGAAGAGGAGCTGGAGGAAGTTATGTCTTCTGCAGAGGTGTTTAGTTTGGAGCATAGAATGGTAGATTGACTTTATGGAACATGCCATGAAAAGTCTGGGCTCTTTGGAGACACCATGTtgctgttttaattaaaaaaaaaatcattagagGCAAAGAGAAGGCAGAATTTTGCTCCCAGCTGTGTGATAGAAAGCACTTTACTCCCACTAACCCTCTCATGTTCCTACTCTGATCCAAACACAGCCATCTGAACGTGTGGAATCAAGCCAGAAGCTTTTTCGAGGGGTGTGATTGTGGGAATGGGGTTTTCCTGGACGGCAAGGTGTTCTGCTTGGAGCCAAGTCATGATCTCATAGCTAATGTtggtggagagggagagagaaggaggaagaggggTAATAATGGCTCCCGTGGTGAGAGAAACAGGTGCTGTGTCCTCTGGTGACATGTGATCTGTGCTTAAGTGCTGATATCCTTGTGTGTCAGGGTCAAGACAGAAGTTGtacttctcttctcttctcttctcttctcttctcatgttTCAGCCTGGTTAGATGTTTCTAATCAGGTACGCAATCCAGATTCTTCTGCATAGGCAAAAGATTACACGCCTTTCTCACTTTCCTTTGCTTTGGCACTGTGAGATGGTAAAGTGTAAATTGGGTGTCAGTTTGTTGGCTACATCTAAATTAGCTGGTGAAATGGGAGATGCACTGGACTCTGGTGCAAGTCAgac

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU126139 lncRNA downstream 157 28707130 ~ 28707742 (-) True G106681
TU126136 lncRNA downstream 10102 28695559 ~ 28697797 (-) True G106678
TU126134 lncRNA downstream 17925 28689455 ~ 28689974 (-) True G106676
TU126132 lncRNA downstream 19789 28687339 ~ 28688110 (-) True G106674
TU126125 lncRNA downstream 50710 28656990 ~ 28657189 (-) True G106667
TU126166 lncRNA upstream 51948 28761518 ~ 28761737 (-) True G106705
TU126180 lncRNA upstream 55169 28764739 ~ 28779018 (-) True G106713
TU126243 lncRNA upstream 95463 28805033 ~ 28805430 (-) True G106772
TU126422 lncRNA upstream 492437 29202007 ~ 29202844 (-) True G106951
XR_003402809.2 lncRNA upstream 563507 29273077 ~ 29280183 (-) True LOC113526826
XM_026914421.2 mRNA downstream 255584 28448739 ~ 28452315 (-) True LOC113526963
XM_034305449.1 mRNA downstream 260961 28430071 ~ 28446938 (-) False dusp22a
XM_026914419.2 mRNA downstream 260986 28423797 ~ 28446913 (-) True dusp22a
XM_026914417.2 mRNA downstream 284914 28415135 ~ 28422985 (-) True irf8
XM_026913722.2 mRNA downstream 474512 28229438 ~ 28233387 (-) True foxf1
XM_026913748.2 mRNA upstream 60055 28769625 ~ 28774040 (-) False LOC113526572
XM_026913747.2 mRNA upstream 60055 28769625 ~ 28774030 (-) True LOC113526572
XM_026914369.2 mRNA upstream 72454 28782024 ~ 28790810 (-) True atmin
XM_026913490.2 mRNA upstream 82221 28791791 ~ 28799363 (-) True cenpn
XM_026913456.2 mRNA upstream 98537 28808107 ~ 28852636 (-) True LOC113526432
TU125182 other downstream 1550759 27152312 ~ 27157140 (-) False si:dkey-151j17.4
TU124747 other downstream 2099570 26569085 ~ 26608329 (-) False LOC113526510
TU124615 other downstream 2466894 26239330 ~ 26241005 (-) True G105376
XR_003402762.2 other downstream 3158971 25385325 ~ 25548928 (-) True si:cabz01090165.1
TU126682 other upstream 992582 29702152 ~ 29713992 (-) False hipk3b
TU127077 other upstream 1633961 30343531 ~ 30344876 (-) True G107525
TU127397 other upstream 2020388 30729958 ~ 30732031 (-) False bbs10
TU127465 other upstream 2107009 30816579 ~ 30819614 (-) True G107803

Expression Profile