RNA id: XM_026914419.2


Basic Information

Item Value
RNA id XM_026914419.2
length 3291
RNA type mRNA
GC content 0.40
exon number 7
gene id dusp22a
representative True

Chromosome Information

Item Value
chromosome id NC_047600.1
NCBI id CM018546.1
chromosome length 31307711
location 28423797 ~ 28446938 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

AAGTCTAAAACAGACAAAATCCATGTGATcagtgataaatgataaatgtatgATAATGACTCTGTCATGAGTGTAAAGAGTTAAAGTGGTGTCCtgttgtgatgtcacacagTCCATCTTAGTAAAAATACAGAAGCGTGTTTTAATGCAGCTCTACAAAATTAGACTGGTATAAGAGTTTGACTTTAAGAGGACTTTTCAGATCTGTGGACCACCAGGAACATCATTTTAGGTCTGCAGTACAGCTTTTTTCCCTTCTACAGCTGTTCCATGTAGCCAAATATCCGTGAAGTGAGAGCTAGTGCTTTTGGTGTGAGCAGGAGGCTAACGCTGCTAAGCTATGCTAGCTTTCATGGTCACCACACATCGCAAATAATTCTTCATGTAAAACAAAATCCTCCTCCAAAATCATGGGGAACGGAATGAACAAGGTTATTGACGGTCTCTATTTAGGAAATATAAGAGACTCAGAGAACCGAGAAAGTCTGTCTCAGAATGGCATCACTCACATCCTGTCTGTGTACAACAACGCCAAGCCGGTACTCGAGgaCATGACGTACCTTTGCATACATGCAGCAGACGCATCTAATCAAAACTTgttacagcattttaaagaGTGCATCCGCTTCATCCATGAGTGTCGGCTTAACGGAGGGGCGTGTCTGGTTCACTGCCTAGCTGGAGTTTCGCGCAGTACCACCATGGTGGTGGCCTATCTGATGACCGTCACCACCTACGGCTGGGAGGAGTGTTTGTCTGCGGTTAAGGCTGTGCGATCGTTCGTGGGTCCTAACTGCGGGTTCCAGCAGCAGCTACAGCAGTTCCAGCGGACGCAAGTTTCAGAGtaTCGTGCTTGGCTCCGGACCAGCTACAGGCCCAGCCCGTTTAAAGACCAAGAGCAGGTTTCGGCTTTACTCATCCTCTACGCAGAGCAGCAGGCTCAGGAGCGGCGGAGACGAGGAGACCAGGACTGGATGAACCAGGCTTCTGGTGTTTATGCTCTGCCTTACAGACGCTGTAATAGATGAGTGATCGCCTTACTGCACTAAAAAAACAAGAGCTACAGGCTCTTAATGACTGCTGCTCACCTGTATAACAACATACACTAAGCTTAACTGAGCTCAGTAATATCACTTTTACTGCTCTTAGTTAAGACTTTTAGGTTATTATGtctgaattaaaaacataacCAAACCACTGAATGTATCATCAGTCCACTTCCAGtcagcacaaataaaaaaataaagttgtgtATTGAATACAGTGATTACACTGAATCACTCTTCCTTAGGAAAGCACCTCTACTGATCGCTCCAGTGACATCTAGATTCATCATCAAGCTGTTTTCctttttgataaataaatgtgctcAGATTACCCGTCCACTGGAAAAGTTgtaatttttaactttttttattttttttttatttttaaattacccATCAGGTTACAACGTGTTgtaatttttgatttttttaaatttatttttctgttaaataaaaatggtcaGACAACCCAATTACTGGCCAAGTTttgcattttagtttttttttttttatttaatttattacctGTCAGATTACCCATCCACTGGACaagttgtatttttaatttttatttttatttatttttctgttaaataaaagtgGCCAGATTACCCATCCACTgcacaataataaaatagtcAGGTTACCCATTCTtgaagatatgtttaaaaaaaataaaaaataaataaaataaaataaattctctTAAATAAAATCAGTCAGATTACCCGTCCACTAGACAAGTTGTAATCCAatcctttttaaaattattattattattattattatttaattacacaTCAGATTACTAGTCCTAGTatagttaaaataaatttactattatagttaaaataaaagtgatcAGATTACCCAtccacagattttttaaaactgaaagtgGATCACTTTTCCACAGacaagttgtatttttttttaaaaatgtttctttcttttttttattgaacgTTGTCAGATTACCCATCCATCAGACAAGAAGTTtcaatatttgttttcttttttttttgcattgttgtGTACACAGAAATTGATTCAGTGTGAATTATCAGGAAAGAATCCAAACTAAACTTGTTTGATTTAAAGTGATGCATAATCAGCTGTATTAGGGTCCACTGTAAATGATCTAGAACATTCTGTAAAAATTTGTACTTTGGTCCTGTGCAAAATCTTCTGTTATTAAACACTATTCATGCTACTGATTAAGGCTGAATGTGAGCCAAAGTCTCTACAGATTTTATAGAGGATCTTATTGAAtaaagaatcttttttttttttttacaagggcCCAGCTTCCCAACACAAGGCCCCTGTAAAAGAGCATCTCCCGTTCAGAGACAAGCAGAAACCTCAACCTGTGCTCACATCCTGAAAACAGGCCAAGAGCATGTGACGTTCACTTTCCAAGATCCGCTTTTCATGGTTTCCAGATGATACTTCCTGGCCGCAGGTTAGACCTCAGGTTGGCATGAAACGTTTAACCATTGTGAGGCCTAATCTATCAGCCATGGTGTTATACACATTGGTACACATAGTGTAGCAAGGAAGATTAAGACCACACAGCAGCTTACAGATAAGAGAACGTGTCTGTTAACTTTGGAGGTTATTCTAAAGACACCTCCACGTTAATACAACTGTGCTGATAATGTTTTATTAGTAACATGCGTTCAAAAGAGTAAGCATGAACAATGTGTACAGTGGTCTAtctgtaaaattatttcataagaGATGTTACATCAGCTGTGACATATTCCAAGGAAAGGCTCTGGATCCAGcttgactctgaccaggataaagtgctttctgaagatgaatgaaggagtTGTTATATCAAATAGTGCAAGGGTTGGAGGGTTAGCAGCAGGtaatgttgctgcctcacagctccaaggtccctgattcgatcctgagctggagacccatccaggctgtattcccgcctcacacccagttGTCCGGGGACAGGCTCCCgatccaccatgactctgaccaggatagaCAGAATAATCttttggggaggtgggaggaaactggagaacccagaggaaaaccATGCAGACATGGTGAGaacgtgaaactccacacagacagcaacccgACCTTAGGATCCAggttggagctgtgaggcggtaACACGACCCGCTGCCCCACTGCGCTGCCCATGCatttatgtacttatttataTCCTTCCTGCCTTACTTCCAAATAAAAGTGGTCATCATGCCCACTG

Function

GO:

id name namespace
GO:0035335 peptidyl-tyrosine dephosphorylation biological_process
GO:0008138 protein tyrosine/serine/threonine phosphatase activity molecular_function
GO:0004725 protein tyrosine phosphatase activity molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
XR_004578301.1 lncRNA downstream 162493 28259697 ~ 28261304 (-) True LOC117597514
TU125776 lncRNA downstream 325803 28097773 ~ 28097994 (-) True G106356
TU125726 lncRNA downstream 344922 28038090 ~ 28078875 (-) True G106319
TU125749 lncRNA downstream 352927 28069599 ~ 28070870 (-) True G106336
TU125671 lncRNA downstream 455596 27967982 ~ 27968201 (-) True G106269
TU126111 lncRNA upstream 153206 28600119 ~ 28601535 (-) True G106653
TU126113 lncRNA upstream 157400 28604313 ~ 28605437 (-) True G106655
TU126114 lncRNA upstream 159345 28606258 ~ 28608041 (-) True G106656
TU126115 lncRNA upstream 162033 28608946 ~ 28609764 (-) True G106657
TU126118 lncRNA upstream 167354 28614267 ~ 28614543 (-) True G106660
XM_026914417.2 mRNA downstream 812 28415135 ~ 28422985 (-) True irf8
XM_026913722.2 mRNA downstream 190410 28229438 ~ 28233387 (-) True foxf1
XM_026913729.2 mRNA downstream 218171 28183533 ~ 28205626 (-) False LOC113526564
XM_026913728.2 mRNA downstream 218173 28183533 ~ 28205624 (-) True LOC113526564
XM_026914328.2 mRNA downstream 483975 27925890 ~ 27939822 (-) True LOC113526894
XM_026914421.2 mRNA upstream 1826 28448739 ~ 28452315 (-) True LOC113526963
XM_034305534.1 mRNA upstream 20845 28467758 ~ 28711935 (-) False gse1
XM_034305533.1 mRNA upstream 20845 28467758 ~ 28711935 (-) True gse1
XM_026914361.2 mRNA upstream 20845 28467758 ~ 28711933 (-) False gse1
XM_026914360.2 mRNA upstream 20845 28467758 ~ 28711932 (-) False gse1
TU125182 other downstream 1266657 27152312 ~ 27157140 (-) False si:dkey-151j17.4
TU124747 other downstream 1815468 26569085 ~ 26608329 (-) False LOC113526510
TU124615 other downstream 2182792 26239330 ~ 26241005 (-) True G105376
XR_003402762.2 other downstream 2874869 25385325 ~ 25548928 (-) True si:cabz01090165.1
TU126682 other upstream 1255239 29702152 ~ 29713992 (-) False hipk3b
TU127077 other upstream 1896618 30343531 ~ 30344876 (-) True G107525
TU127397 other upstream 2283045 30729958 ~ 30732031 (-) False bbs10
TU127465 other upstream 2369666 30816579 ~ 30819614 (-) True G107803

Expression Profile