RNA id: XM_026913555.2


Basic Information

Item Value
RNA id XM_026913555.2
length 1435
RNA type mRNA
GC content 0.51
exon number 9
gene id ccnp
representative True

Chromosome Information

Item Value
chromosome id NC_047600.1
NCBI id CM018546.1
chromosome length 31307711
location 20382810 ~ 20389633 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

CCTCACGTGCGCTAATTAACTTGCAGTGGATTTGGCAGGTGCGCTCGAGCAGGTAGCTGCAGGTTCCTGGTGAGCGCGTGTCCGGTTGCGTCATGGCCAGAACCGGATTCTGTGATTCCAGGGCGCTGTTGGACCGCAAGACAGAAGAAGCCCGATTCCCTTTGCGCGCGTGGGCGAACGCATGCGCTGTGCGGGAGCGCGGGGTGCTGAGTGAGGGAGAGGAGCAGAAACAGCAACACAAAGTGGACAGTACAGAGTACAGATGGGTCCAGCGGTTGCCGTTATTTGCAGAAGATGGAATCATTATGGAGTTTGCTCAGCAGAGCAGATCAGTTGTTCCTGCAGTAGAGCATTATGAGGAGGAGGCTGTGTTGAATCACCTGCATGGTCTGCAGCTTGCGCCTGCACTAAGAGATCTAGTTCCTGAGCTGGTGCACAGAGAGATAGAAGTGGCAATGAGCAAACTTGGGCTGCTGTACGACCGTACCTACACATTGGACATTTTTTCTGACATGATGAGGAGTCAGCAGCACCTTGCTCTGTCGAGCAGCGAACTGCCCAAACCATTTACAGAAACAACGCGTGCCATTTTGGTGGACTGGCTCATTCAGGTTCATGAAGCATTTAACTTCTCAGAGGAGACACTGTATTTAGCAGTGCACCTGCTGAACCGTGTGCTCCGGCAGATCAAAATCTCCATCTCCAACTTGCAGCTACTCGGTGTCGTCTGTCTATTTCTCGCCGCAAAGAAAGAGGAGTGCCTGCTGCCAGAGgtATCTGAGCTGTGCTACCTGATGGCGAACACTTACAGTAAGAAGCAGTTGTTGCGCATGGAGCGCAGGGTTTTGTGCACGCTGAAGTTTGACCTGTCTCACACTCCACCCATTCACTTCCTGCTACTGTCAGCGTACATTGCGCGTTGTGGCGAGAAGGTGATCTGCATGGCACGGTACCTGTTGGAGTTGTCTCTCCTCGAagcgaagtgtgtgtgttttttcccgGTTCagctcgctgctgctgctctgcGTCTGGCACGCCATCTCATTCAGGAGCCAAACACCCCGGAGAGTGAGGCGGCCTGGTGTATCGCATCTACTATATACTTGGGCAGCGAGGCAACACTCTTCACAATCATGCACATCATGGCCGCTGCTGCAGCGCGAGCTCACAACCAAGAAACTCGAGCGACGTTCGTCAAATTCTCTACAAAGGAGACGCTGTATGTGAGTCTGCACCCTGCACTGAAGAGTGCTCCCCGTCTGCTGAGCCGTTATACCTGAACAATAGTAACAGTAAAAAGTAGTGTCTGTAACTAAatgtttgtatctgtatcttgTTACTCTTTTAGGCCATCTTGTCCAATTTGtcaaaaaaagttacatttgtttgtatccattttaaatatttgaattaaaaGTGCTTGTTCgaaaattaa

Function

GO: NA

KEGG:

id description
ko04113 Meiosis - yeast

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU121267 lncRNA downstream 23269 20358215 ~ 20359541 (-) True G102434
TU121048 lncRNA downstream 26213 20282185 ~ 20356597 (-) True G102272
TU121045 lncRNA downstream 91819 20244335 ~ 20290991 (-) True G102270
TU121046 lncRNA downstream 119670 20257332 ~ 20263140 (-) True G102271
TU121000 lncRNA downstream 289008 20092984 ~ 20093802 (-) True G102225
TU121262 lncRNA upstream 6236 20395869 ~ 20414528 (-) False akt2
TU121277 lncRNA upstream 82238 20471871 ~ 20472745 (-) True G102444
TU121282 lncRNA upstream 88700 20478333 ~ 20478556 (-) True G102449
TU121286 lncRNA upstream 104624 20494257 ~ 20496301 (-) True G102453
TU121318 lncRNA upstream 189057 20578690 ~ 20581168 (-) True G102472
XM_026913303.2 mRNA downstream 5478 20362330 ~ 20377332 (-) True si:ch211-132b12.7
XM_026913745.2 mRNA downstream 90487 20215142 ~ 20292323 (-) True nectin1b
XM_026913612.2 mRNA downstream 328374 20051332 ~ 20054436 (-) True LOC113526513
XM_026913684.2 mRNA downstream 885817 19407050 ~ 19496993 (-) True pik3c2a
XM_026913687.2 mRNA downstream 885820 19407050 ~ 19496990 (-) False pik3c2a
XM_026913651.2 mRNA upstream 6233 20395866 ~ 20416574 (-) True akt2
XM_026913362.2 mRNA upstream 32640 20422273 ~ 20453147 (-) False vaspb
XM_026913363.2 mRNA upstream 32640 20422273 ~ 20453147 (-) False vaspb
XM_026913361.2 mRNA upstream 32640 20422273 ~ 20453147 (-) True vaspb
XM_026913365.2 mRNA upstream 70710 20460343 ~ 20464685 (-) True snrpd2
XR_003402829.1 other downstream 402551 19980069 ~ 19980259 (-) True LOC113527007
XR_003402833.1 other downstream 1031867 19350762 ~ 19350943 (-) True LOC113527011
TU119855 other downstream 2186004 18187447 ~ 18196806 (-) True G101178
XR_004578368.1 other downstream 2295839 18086655 ~ 18086971 (-) True LOC117597604
TU118530 other downstream 5028173 15347166 ~ 15354637 (-) True tmem170a
TU121422 other upstream 563969 20953602 ~ 20966910 (-) True G102566
XR_004578325.1 other upstream 605708 20995341 ~ 21013100 (-) False sertad3
XR_004578321.1 other upstream 1845070 22234703 ~ 22306769 (-) False si
XR_004578330.1 other upstream 3201312 23590945 ~ 23610448 (-) True mmp23bb
TU123617 other upstream 4233883 24623516 ~ 24711368 (-) True G104473

Expression Profile