RNA id: XM_026913365.2


Basic Information

Item Value
RNA id XM_026913365.2
length 581
RNA type mRNA
GC content 0.50
exon number 3
gene id snrpd2
representative True

Chromosome Information

Item Value
chromosome id NC_047600.1
NCBI id CM018546.1
chromosome length 31307711
location 20460343 ~ 20464685 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

GGAGACTGACCCGGAAATAGTTTTATTTGAGGCGGTTTAGACCCGGAAGTGGCGCCATCACCAGCGACGTTCAGTCAGCGTGTTAGCAGACCTGCTACCTGTTTTATCTGTCAGAGTTGTAACAGAggataaaacaaaatGAGTCTTTTGAATAAGCCAAAGTCGGAGATGACCCCTGAGGAGCTGCAGAAGcgtgaggaggaggagtttaACACCGGGCCGCTGTCTGTCCTCACGCAGTCCGTCAAGAACAACACGCAGGTGCTGATCAACTGCCGCAACAACAAGAAGCTGCTGGGTCGAGTCAAAGCCTTCGACAGacACTGTaacatggtcctggagaacgtAAAGGAGATGTGGACTGAGGTGCCTAAGAGCGGAAAGGGAAAGAAGAAGTCCAAACCAGTGAATAAAGACCGTTACATCTCCAAGATGTTCCTGAGAGGAGACTCGGTCATCGTGGTGCTGAGGAATCCACTGATCACCGGCAAATAACTTGTATACTCTGAAGCGCGCACgttctcttcacacacacacacacacacacacacacacacacacacacacacacacacacacac

Function

GO:

id name namespace
GO:0000387 spliceosomal snRNP assembly biological_process
GO:0000245 spliceosomal complex assembly biological_process
GO:0034660 ncRNA metabolic process biological_process
GO:0071013 catalytic step 2 spliceosome cellular_component
GO:0034709 methylosome cellular_component
GO:0034715 pICln-Sm protein complex cellular_component
GO:0034719 SMN-Sm protein complex cellular_component
GO:0005829 cytosol cellular_component
GO:0019013 viral nucleocapsid cellular_component
GO:0005654 nucleoplasm cellular_component
GO:0005685 U1 snRNP cellular_component
GO:0005687 U4 snRNP cellular_component
GO:0005689 U12-type spliceosomal complex cellular_component
GO:0005515 protein binding molecular_function

KEGG:

id description
K11096 SNRPD2, SMD2; small nuclear ribonucleoprotein D2

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU121262 lncRNA downstream 45815 20395869 ~ 20414528 (-) False akt2
TU121267 lncRNA downstream 100802 20358215 ~ 20359541 (-) True G102434
TU121048 lncRNA downstream 103746 20282185 ~ 20356597 (-) True G102272
TU121045 lncRNA downstream 169352 20244335 ~ 20290991 (-) True G102270
TU121277 lncRNA upstream 7186 20471871 ~ 20472745 (-) True G102444
TU121282 lncRNA upstream 13648 20478333 ~ 20478556 (-) True G102449
TU121286 lncRNA upstream 29572 20494257 ~ 20496301 (-) True G102453
TU121318 lncRNA upstream 114005 20578690 ~ 20581168 (-) True G102472
TU121291 lncRNA upstream 174186 20638871 ~ 20686185 (-) True G102458
XM_026913362.2 mRNA downstream 7196 20422273 ~ 20453147 (-) False vaspb
XM_026913363.2 mRNA downstream 7196 20422273 ~ 20453147 (-) False vaspb
XM_026913361.2 mRNA downstream 7196 20422273 ~ 20453147 (-) True vaspb
XM_026913651.2 mRNA downstream 43769 20395866 ~ 20416574 (-) True akt2
XM_026913555.2 mRNA downstream 70710 20382810 ~ 20389633 (-) True ccnp
XM_034304978.1 mRNA upstream 5675 20470360 ~ 20471089 (-) True foxg1c
XM_026913364.2 mRNA upstream 8494 20473179 ~ 20476270 (-) True pglyrp5
XM_026914140.2 mRNA upstream 16141 20480826 ~ 20484801 (-) True polr2i
XM_026913853.2 mRNA upstream 24855 20489540 ~ 20536022 (-) True rasa2
XM_034305003.1 mRNA upstream 76958 20541643 ~ 20564081 (-) False zbtb38
XR_003402829.1 other downstream 480084 19980069 ~ 19980259 (-) True LOC113527007
XR_003402833.1 other downstream 1109400 19350762 ~ 19350943 (-) True LOC113527011
TU119855 other downstream 2263537 18187447 ~ 18196806 (-) True G101178
XR_004578368.1 other downstream 2373372 18086655 ~ 18086971 (-) True LOC117597604
TU118530 other downstream 5105706 15347166 ~ 15354637 (-) True tmem170a
TU121422 other upstream 488917 20953602 ~ 20966910 (-) True G102566
XR_004578325.1 other upstream 530656 20995341 ~ 21013100 (-) False sertad3
XR_004578321.1 other upstream 1770018 22234703 ~ 22306769 (-) False si
XR_004578330.1 other upstream 3126260 23590945 ~ 23610448 (-) True mmp23bb
TU123617 other upstream 4158831 24623516 ~ 24711368 (-) True G104473

Expression Profile