RNA id: XM_026914140.2


Basic Information

Item Value
RNA id XM_026914140.2
length 746
RNA type mRNA
GC content 0.44
exon number 6
gene id polr2i
representative True

Chromosome Information

Item Value
chromosome id NC_047600.1
NCBI id CM018546.1
chromosome length 31307711
location 20480826 ~ 20484801 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

CGCATGCGCAGTATTGTCGCGGCTGTTTTCACCAGCGCTGGTGCAGTGGTGTTGAGTCTTTTCTTCGCGGTATTATCCAGTTGCAATAAGGTGTCTATGGATTTGGAAAGCGGCGCGTGTGAGCCAGGCTTCGTCGGGATCAGGTTCTGTCAGGAATGTAACAACATGCTGTATCCAAAAGAGGACAAAGAGAACCGCATCCTCCTCTACGCTTGCAGGAACTGTGATTATCAGCAGGAAGCCGATAACAGCTGCATCTATGTGAACAAAATCACACACGAAGTTGACGAGCTCACACAGATAATTGCTGATGTGTCTCAAGATCCAACACTGCCTCGTACCGAAGATCATCCATGCCCTAAATGTGGCCACAAGGAGGCAGTGTTCTTCCAGTCACACAGCATGAAGGCTGAGgATGCAATGAGGCTGTACTACGTGTGTACGGCTCCACACTGTGGACACAGGTGGACAGAGTGAAGGAGAGGTGGAGAGACTCACTCGCCTAATTTGTTATTAAGGCTAACGAGATACAGCTGCTTCAGTGTGGAGTGAATCTTCATTagctgagctgtgtgtttgtgtattcagAGGActgagtcgtgtgtgtgtgtgtgtgtgtataaaataatgGATGCTTATagtgtttttcttattaaatattttttaaagattttatgatttttgagTTTTATGTGAAATAAGTATGTACCAAAGAGACAtagtaaaattaaatgtttcatttttaa

Function

GO:

id name namespace
GO:0006351 transcription, DNA-templated biological_process
GO:0005634 nucleus cellular_component
GO:0003899 DNA-directed 5'-3' RNA polymerase activity molecular_function
GO:0003677 DNA binding molecular_function
GO:0008270 zinc ion binding molecular_function

KEGG:

id description
K03017 RPB9, POLR2I; DNA-directed RNA polymerase II subunit RPB9

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU121282 lncRNA downstream 2270 20478333 ~ 20478556 (-) True G102449
TU121277 lncRNA downstream 8081 20471871 ~ 20472745 (-) True G102444
TU121262 lncRNA downstream 66298 20395869 ~ 20414528 (-) False akt2
TU121267 lncRNA downstream 121285 20358215 ~ 20359541 (-) True G102434
TU121048 lncRNA downstream 124229 20282185 ~ 20356597 (-) True G102272
TU121286 lncRNA upstream 9456 20494257 ~ 20496301 (-) True G102453
TU121318 lncRNA upstream 93889 20578690 ~ 20581168 (-) True G102472
TU121291 lncRNA upstream 154070 20638871 ~ 20686185 (-) True G102458
TU121483 lncRNA upstream 510724 20995525 ~ 21003780 (-) True G102600
TU121581 lncRNA upstream 638514 21123315 ~ 21124955 (-) True G102691
XM_026913364.2 mRNA downstream 4556 20473179 ~ 20476270 (-) True pglyrp5
XM_034304978.1 mRNA downstream 9737 20470360 ~ 20471089 (-) True foxg1c
XM_026913365.2 mRNA downstream 16141 20460343 ~ 20464685 (-) True snrpd2
XM_026913362.2 mRNA downstream 27679 20422273 ~ 20453147 (-) False vaspb
XM_026913853.2 mRNA upstream 4739 20489540 ~ 20536022 (-) True rasa2
XM_034305003.1 mRNA upstream 56842 20541643 ~ 20564081 (-) False zbtb38
XM_034305004.1 mRNA upstream 56842 20541643 ~ 20564081 (-) False zbtb38
XM_034305005.1 mRNA upstream 56842 20541643 ~ 20564081 (-) False zbtb38
XM_034305001.1 mRNA upstream 56842 20541643 ~ 20564081 (-) True zbtb38
XR_003402829.1 other downstream 500567 19980069 ~ 19980259 (-) True LOC113527007
XR_003402833.1 other downstream 1129883 19350762 ~ 19350943 (-) True LOC113527011
TU119855 other downstream 2284020 18187447 ~ 18196806 (-) True G101178
XR_004578368.1 other downstream 2393855 18086655 ~ 18086971 (-) True LOC117597604
TU118530 other downstream 5126189 15347166 ~ 15354637 (-) True tmem170a
TU121422 other upstream 468801 20953602 ~ 20966910 (-) True G102566
XR_004578325.1 other upstream 510540 20995341 ~ 21013100 (-) False sertad3
XR_004578321.1 other upstream 1749902 22234703 ~ 22306769 (-) False si
XR_004578330.1 other upstream 3106144 23590945 ~ 23610448 (-) True mmp23bb
TU123617 other upstream 4138715 24623516 ~ 24711368 (-) True G104473

Expression Profile