RNA id: XM_034305200.1


Basic Information

Item Value
RNA id XM_034305200.1
length 4894
RNA type mRNA
GC content 0.47
exon number 11
gene id lsm14ab
representative False

Chromosome Information

Item Value
chromosome id NC_047600.1
NCBI id CM018546.1
chromosome length 31307711
location 5644816 ~ 5658105 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

CAGCATGCTTTGCAGTTGATGCGGAGGAAAATGAAATCGGCCATGTCGTGGTAGTTAGCAGTAACTTTCTTTGAGGGAACTGCGCCGACAAGAGTGAGGAGGTTATATCGAGTGTGCTCGAGAAGAGGACACACGGAGGGGGTTTGTGCACCCACACGAGGTGTTTTGATACAGAAATTAACGTGAAGGAAGAGCTGAAAGGCGATAAGGAGGACGCCATGAGCGGCGGGACGCCTTACATCGGCAGCAAAATCAGCCTGATCTCCAAGGCCCAGATCCGCTATGAGGGAATCTTATACACCATCGACACCGAAAACTCCACCGTCGCGCTCGCCAAAGTGAAATCTTTCGGCACTGAAGACCGTCCTACAGACAGACCAGTGGCTCCCCGGGACGATGTCTTTGAATACATTATCTTTAGAGGAAGTGACATCAAAGATCTGACCGTTTGTGAACCACCGAAGCCCAACTGCTCCCTGCCTCAAGACCCGGCCATCGTACAGTCATCTCTAGTCTCCACTCCGGCGCCGTCCTTCCAGCCTGTGGGTTCTTACGCGTCCTTCAGCCGACCCCCTGTGCGCGCCTACAGCCAGTTCTCTGCTCCCCTGGTGCCCCAGCCCATCGGCGCTCCTGTCACTGCAGGAAGTTCAGGGTCCGCGTTCGGTAGCGAGACAAACGTAGCCGCCCCTCTGTCCCAGAGCGCTCTCCCCTCTGACCCTGTCTCTCTGAGCTCACGTGTAACTGAAGGCCGCACGAGCCCGTCTCTCGATGCCCTGCGGAAGAGCCCGAGCCTGGAACCTGCGGTGCAGCCTGCTCCTCTAGCGCCTCCTGCTGCATCTGTGAGTCAGAAGAGTCCTGGAGGGGGCAGACCTCCTCCCAGCTCCCAGAAACAGCCTTCTGACAGCCAGGAGCAAAGCAGGGCTGCTGAAGTAGAGAAGAATGCTCGCCCAGAAACGGACTTGAGCAAGGTGGAGAACCGGGAAGCCAGCAAACGCCCACAAGGCAGTGCCCCCGCACTgcgaagaggaagaggaggaagtggTGGCGGTGGCGGCAGCGGCGGTGGAggaagtggtggtggtggtggaagTCAGCGCGGCCGCGGCCGGTTTAACATGCGCAGAGACGGACCAATGAAGTTTGAGAAGGACTTTGACTTTGAGAGTGCCAACGCCCAGTTCAACAAGGAGGAGATCGACCGCGAGTTCCAGAGCAAGCTTAAAATCAAAGATGAGAAGGCGGTGAACGGGGAAGACAAGGGCGACTCGGGTGTGGAGACGCAAAACAGCGAGGGCAACGTGGACGAGGACGACCCACTGGGACCCAACTGCTACTACGACAAGTCCAAGTCCTTCTTCGACAACATCTCCTGTGACGACTCCAGaaaagatAAACCTGGAGGTGGCAGGGAGCGGAGGCAGACCTGGGCAGAGGAAAGGAGGATGAACGCTGAGACGTTTGGCCTCCCGTTGCGCCGAGGGCGTGGAGGTTTCCGGGGCAGAGGGGGCCCTATGGGATTCCGTGGCGGTCGCGGGCGCGCAGCCGGACGCGGCTCTTTTGGACCGCCCCGCGGTGGATCTGGATTCAGGGGGGGGTTCCGCTCAGGACGGGGAGGACGAGGAGACTTCTCTGAATTTGAGTACCGGAAGGACAACAAGGTGGCAGCGTAGTTCACAAGAGGAGCAACTACAGCGTCTCCTACAGGCTGGAGTTCTccttccctcctctctcctcccctaTAGACACTCTGTCCGTCTGTCCTGAATCCAGTGCGGGAGGTGGACTCGCTCCTCCTTTCCGCTTcccttctccttttttttttttaaagaaaacaaaaagtcaatctttggatctttctttctttgatacagacacagaagactttgcaaaagaaaaaaaagcgcAACTTTAGTGAAATTACTTTTCAGTATTTTTGCATCAGCGTTTTAGTTCCTTTCTTACACAACAATAATaggaattaaaatgtatttgataaTGTTCctgttaggtgtgtgtgcacacacacacacacacacacacacacattcacacacacacacacactcgcgcacacacacacgtgtgtatgCTGACGCCCGCTGATACTGTGAGCTCCCATCAGTGAaatagctttatttttctttccttccagtCTTTTAGAAGCACCAGACTCGTCTTTGTGTCCTGTACGGTCACGATGAAATCTTCATCCTTAAACCACTGCCTAAACCACATTTCAGTTAGACCCGTGACTCTGCTGCGAGTAGCTACGACGTGTAGATGActtatctttctttcttgctttcctCCTATTTTTTTGTAGtgactcattttattttaaagattcatcCCCCCTGTTTCCCTGGCTGAATGGTCTGATCCAGCTGCGTCCTAAATTCTCATCAACTCGGATCTCAGATGAGGctgttgaattaaaaaaaaaaaaaaaaaaaaaaaaagtgttgaatgTAATAATGTTGATGCGAAGTTAGCCAGCACTCAGTGGGTTTtgggaaattattattattattgttattgttgttttcttgtttaAGGAATTATTCCCATATGTCTGTACAGTGCCATTGTAGACAGGAAGTGTTCACAGTACCCTGCTGGAAGaggcttctttctttctttctttcttgacaTGAAAAAAACGGACACGTTTGCTTAGAATTCACATAAAGTTGAGACCCGAGTGCCAGTGGATTTTGCCTTTCGATGATTATGTAGATGTCGTCGTGTCAGGCTCTTTGATACTTTGACGTGTTTAAATTTGTCGAgcctttacatttacagcacgAATAATCACCATTTTCTGTCAAGTTCTTCAGGGATTGTCCAGCGCACCCTTTAACAGTTAGATCGATTCccctcaaagaaaaaaaattcatttgcaCTTTAGAGATGAATAACGCCATGCTACTCGAACTAGTAGTTTGTTTCTACGCCATGTTCTCTCTCCGCTTTTGGCTTTAAATATGAGcagctctgattttttttttttttttctttaaagtctTAAAAAGCTCAGAATCCactagagaaaaaaatgtatgaagtgAAGAACAGATGTGTTGGGAACGTGAAGCTAACGCTTGTGTAATGAGATGTGAATTCTGTTTAAGAGCCTGGTAGCATTACAGCAAATCCAGGTCATGGGTTTAGAGAGCAGATCAGAGATCATCTctctaaaacctttttttatgaTCATTTAAAGGTTTCTGCTTGGAGTCAGGATTTAGTTTGCGTGCTGAAATTAAAGCAGGGCGTTTTGGTGCAGATTTGAGGTGTCCCTGCGTTAACAAGCACAGAGCtcgagtttaaaaaaaaaaaaaaaaaaaaaaaaaggtgataagCCAGATCATGACATTACCACTAACCTTTTTCACTTTCAGCTTGATGTTCAAcacaaaaaattttaaaatgcactaAGGTTTGCCTGatttacacaaaaaacaaacaaaaaaaaattcagctagATAGCGAACCTGGCTGCTGGCTTTAATTATACAACAAAATATTTGCCTTTGTTACGGAGATGAGATGGATGTTACCTCTCTAGCAGTAGATATCTGTTACAAAGCTAGCCAAGTTCAATAGCAAGCTGCGTATTTTAAGGCTCATTTCTCACTGAAAGCAGTATTTTATACGAAGCAGTAACACTGTGCTGAAGAAGTGGAAAGAAGGACGAGTGGTGATGTCATGATCACATGGTTTTGGCATTTAGCTGATCGCATGATCACGTGCTCCTCAGATggataaaacactcagtgtgttCTCAGAAAGTCAGTGATGAactgtgtgaacagtgtgtgtgtgtgtgtgcagaatgagcacattagAGCTTTGACTGTGTAGGACCGCTGATCCAGGGTCAGCGTTTAGTTTCATTCGGGATTCCTCAGCCCTGCTTATGAACGAATGCCAGCTCTTCAGATGCTTTATTGCATCATATTTAACTTGTTTTTCCCCCTGAATGTCAATGAAGCACTTTTTTGCTTCTCTACCAGCATTTGGGAgtttgtatgcatttttttcttttttttaaaattgttggtCGTTTCTTATTTTCCGGGTATTGGCTTATGAAGGGTTTATGATGAAAGAGACTCGTTTGTGCTTTGTTCTTTCGTCTCGTATCGATAAGACGCAGTAAGGTTCGTGTTCCTGTTGTGGCTTGAGGTTACCTTTGTGGCTGTTGTGTACTTCCTGTAGGCGCTACGCGATGAACCTTACCTACATGTGGCATATTATTGGTCTTTTGGTAGGCAGCTAGTTTAATGCCCTGCAGTTCCGAATGAGCCGTCTGATTGGATGATTTATTCGTGGGTTGGAGCACAGCATGATGGGAAATGCCTTAATGAGCCAGCAAAGTTGTGTGTCATAAGTGTTTGGGTTGCATTGAGCTCTCTCTTGCCCGTGTAGTGCACTACTCAGGCCGTGAGCTGAGGACATGCAAATCCTCTGGAGTGTCAAATTTGGGATTTTGCTCTagcgagagagtgagtgagtgactgagtgagagagagagagagtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgagtgtgagagagagagtcctgGACTGATGCAATAATCACATTAACGCCCCACGCCgcccctctcctcctcctgctcatATGAGATGTCAGACTGTACATACAGAGTTTCATTTTGTAAAGGCGAAACAGGattgttttctctcttctaAAAGAATTTGATTGgcttatgtgttttttttttgttgtttttgttttgtttgtatttccTGAATAAAGCAATTGTACAGCATGGTGTACTTTTAGTGACCAGGTTGAAgtttttattcagaaatgagaaataaatagtTGTTCAAAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU112137 lncRNA downstream 1880 5639696 ~ 5642936 (-) True ss18l2
TU112135 lncRNA downstream 1880 5640920 ~ 5642936 (-) False ss18l2
TU112136 lncRNA downstream 1880 5641006 ~ 5642936 (-) False ss18l2
TU112069 lncRNA downstream 82410 5560555 ~ 5562406 (-) True G94325
TU112021 lncRNA downstream 252968 5390255 ~ 5391848 (-) False G94284
TU112194 lncRNA upstream 45476 5703581 ~ 5703791 (-) True G94441
TU112144 lncRNA upstream 55738 5713843 ~ 5786431 (-) False LOC113534829
XR_004578356.1 lncRNA upstream 253663 5911768 ~ 5913593 (-) True LOC117597596
TU112371 lncRNA upstream 367255 6025360 ~ 6029235 (-) True G94607
TU112372 lncRNA upstream 371204 6029309 ~ 6030675 (-) True G94608
XM_026927290.2 mRNA downstream 1867 5640613 ~ 5642949 (-) False ss18l2
XM_026926920.2 mRNA downstream 61401 5570395 ~ 5583415 (-) True gpib
XM_026927723.2 mRNA downstream 229893 5409567 ~ 5414923 (-) True larp6a
XM_026927159.2 mRNA downstream 272689 5354621 ~ 5372127 (-) True ulk3
XM_026927773.2 mRNA downstream 537423 5085274 ~ 5107393 (-) True LOC113534806
XM_026927800.2 mRNA upstream 98333 5756438 ~ 5786423 (-) False LOC113534829
XM_026927799.2 mRNA upstream 98333 5756438 ~ 5785405 (-) False LOC113534829
XM_026927798.2 mRNA upstream 98333 5756438 ~ 5784930 (-) True LOC113534829
XM_034305479.1 mRNA upstream 134116 5792221 ~ 5796056 (-) True LOC113534713
XM_034305354.1 mRNA upstream 147572 5805677 ~ 5807182 (-) True LOC113534712
XR_004578382.1 other downstream 1152077 4492546 ~ 4492739 (-) True LOC117597618
TU111361 other downstream 1471222 4173288 ~ 4173594 (-) True G93711
XR_004578380.1 other downstream 2113125 3429028 ~ 3531691 (-) False kcnab1a
TU110621 other downstream 2876518 2759612 ~ 2768298 (-) True G93047
TU110620 other downstream 2893647 2749388 ~ 2751169 (-) True G93046
trnam-cau_19 other upstream 535970 6194075 ~ 6194147 (-) True trnam-cau_19
trnap-agg other upstream 1207163 6865268 ~ 6865339 (-) True trnap-agg
XR_003403498.2 other upstream 1489839 7147944 ~ 7157488 (-) False LOC113534453
XR_003403522.2 other upstream 1784268 7442373 ~ 7614096 (-) False shank3a
TU114125 other upstream 2810196 8468301 ~ 8478236 (-) False LOC113534821

Expression Profile