RNA id: XM_034305479.1


Basic Information

Item Value
RNA id XM_034305479.1
length 987
RNA type mRNA
GC content 0.47
exon number 9
gene id LOC113534713
representative True

Chromosome Information

Item Value
chromosome id NC_047600.1
NCBI id CM018546.1
chromosome length 31307711
location 5792221 ~ 5796056 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

GTACACAGAGAAGGGTATAAAACCCAGCCGTCCCTCTGCCACTGTACCATCTCATTTCTTCTTGGAGTTCTGAGGAcatttgctgtcatgtttgtgTATAAGGTGACTGTGGGTCTGTTGGCCCTGCTGCTGGTCTGTTCTGCAGAGGAGgactctctttctcttctgccTGTGGGAGAATTGATCGAGAGAGCAAACAGTAAAATCAATCGTGCCATCGGTGACACTGTGCTGATTGAAGGAGACATTGCTGTTCCTACTGGCAATGAGAAAAACGCTGACCCCTGCACCGCCATGAACTGCAAGTGGCCAAAGTCGGCTGACGGAAAGGTCTACGTCCCCTACGTGATCTCCTACGCATACACTGATACTCAGATGCAGGTTATCAGGAACGGTCTGGACTCCTTCTCCACAGTCTCCTGCATCCGCTTCATACCACGCACCAATGAGAACGCCTATATTGACATTACATCTCGCGATGGATGTTGGTCCTTAATTGGACGAACTGGCAATATGCAGACGGTGTCTCTGGCCCAAAATGGTTGTGTCTATCACCAGATCGTCCAACATGAGCTTCTTCATGCTCTGGGCTTTAATCATGAACAATGCCGCAGTGACCGAGACAAGCACATCCAAGTTGTCTGGAATAACGTTTCAGACGATCAGAAACACAACTTCAACATAAAGCAAACTCTGAATCAGGGAACTCCCTACGATTACAACTCCGTCATGCAGTACTCCAAAACTGCTTTCTCTAAGAATGGCCAGGCCACCATGATCCCCATCCCTGACCCCAATGTGGTCTTTGGCAAAGCCACTCAGATGAGCCAAAACGACATCAACAGACTCAAATTACTCTACCAGTGCTAAACTGCTGTGTGCTGCAGATGACCAGTCGTCCTGATGTCCTCTGTTGTTTGTAATGGcagttttaatctgtttaattgtttttggagacaataaacatgaataacTTCATTTCCCAAA

Function

GO:

id name namespace
GO:0046872 metal ion binding molecular_function
GO:0008237 metallopeptidase activity molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU112144 lncRNA downstream 5790 5713843 ~ 5786431 (-) False LOC113534829
TU112194 lncRNA downstream 88430 5703581 ~ 5703791 (-) True G94441
TU112137 lncRNA downstream 149285 5639696 ~ 5642936 (-) True ss18l2
TU112135 lncRNA downstream 149285 5640920 ~ 5642936 (-) False ss18l2
TU112136 lncRNA downstream 149285 5641006 ~ 5642936 (-) False ss18l2
XR_004578356.1 lncRNA upstream 115712 5911768 ~ 5913593 (-) True LOC117597596
TU112371 lncRNA upstream 229304 6025360 ~ 6029235 (-) True G94607
TU112372 lncRNA upstream 233253 6029309 ~ 6030675 (-) True G94608
TU112506 lncRNA upstream 434800 6230856 ~ 6231165 (-) True G94728
TU112508 lncRNA upstream 436949 6233005 ~ 6233239 (-) True G94730
XM_026927800.2 mRNA downstream 5798 5756438 ~ 5786423 (-) False LOC113534829
XM_026927799.2 mRNA downstream 6816 5756438 ~ 5785405 (-) False LOC113534829
XM_026927798.2 mRNA downstream 7291 5756438 ~ 5784930 (-) True LOC113534829
XM_034305201.1 mRNA downstream 134116 5644816 ~ 5658105 (-) False lsm14ab
XM_034305200.1 mRNA downstream 134116 5644816 ~ 5658105 (-) False lsm14ab
XM_034305354.1 mRNA upstream 9621 5805677 ~ 5807182 (-) True LOC113534712
XM_034305355.1 mRNA upstream 11366 5807422 ~ 5809517 (-) True LOC117597570
XM_026927349.2 mRNA upstream 128475 5924531 ~ 5928298 (-) True chst8
XM_026927705.2 mRNA upstream 235360 6031416 ~ 6042803 (-) True LOC113534754
XM_026927517.2 mRNA upstream 252420 6048476 ~ 6171119 (-) False gramd1bb
XR_004578382.1 other downstream 1299482 4492546 ~ 4492739 (-) True LOC117597618
TU111361 other downstream 1618627 4173288 ~ 4173594 (-) True G93711
XR_004578380.1 other downstream 2260530 3429028 ~ 3531691 (-) False kcnab1a
TU110621 other downstream 3023923 2759612 ~ 2768298 (-) True G93047
TU110620 other downstream 3041052 2749388 ~ 2751169 (-) True G93046
trnam-cau_19 other upstream 398019 6194075 ~ 6194147 (-) True trnam-cau_19
trnap-agg other upstream 1069212 6865268 ~ 6865339 (-) True trnap-agg
XR_003403498.2 other upstream 1351888 7147944 ~ 7157488 (-) False LOC113534453
XR_003403522.2 other upstream 1646317 7442373 ~ 7614096 (-) False shank3a
TU114125 other upstream 2672245 8468301 ~ 8478236 (-) False LOC113534821

Expression Profile