RNA id: XM_026926870.2


Basic Information

Item Value
RNA id XM_026926870.2
length 3204
RNA type mRNA
GC content 0.39
exon number 7
gene id uck2a
representative True

Chromosome Information

Item Value
chromosome id NC_047602.1
NCBI id CM018548.1
chromosome length 30442583
location 11677511 ~ 11696791 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

acacacacacacaaagggaagAGGAAGGAGGCGGAGCAGTGCTGGTGTTGCTTTGCTCGGAGCAGCGCTGATCGTGTTCACACTGACCGGCAGCATGGCAGGAGAAAGCGAGGCCGATCTGGAGCACCGTGAAcccgagcacacacacaccatccgaCAGCCTTTCCTCATCGGGGTGGCGGGGGGCACTGCCAGCGGAAAGTCGTCCGTGTGTGGCAAGATTATGGAGCTTCTTGGCCAGAATAAAATTGACCATCACCAAAGGCAGGTTGCCATCCTGAGTCAGGACAGTTTCTACAGGGTGCTTACCCCAGAACAGAAAACCAAGGCTCTTAAAGGACAATTCAACTTTGATCACCCAGATGCATTTGATAATGAGTTAATAGTTAAGACTCTGTGGGACATCATGGAGGGAAGAACAGTTCAGATCCCAGTCTATGACTTTGTAACCCATTCCAGGAAGAAGGAAACAGTGACAGTGTACCCGGCTGACGTGGTGCTGTTCGAAGGCATTCTCATGTTCTACTCACAGGAAATCCGGGATCTCTTTCAGATGAAGCTGTTTGTGGACACAGATGCTGATACACGACTCTCACGCAGAGtCTTGCGAGACATCAGTGAGCGAGGACGGGACCTGGAGCAGGTCTTAAGTCAATATATCACATTTGTGAAGCCTGCTTTTGAAGAGTTCTGCCTGCCAACAAAAAAGTATGCTGATGTGATCATCCCAAGGGGAGCTGATAATCTAGtTGCCATTAATCTGATAGTGCAGCACATCCAGGACATTCTGAACGGTGGCTTGACCAAACGACTGAACGGCTGTCTTAATGGCCACACTACTCCTCGCAAGCGGCAGCCATCAGAGTCAAGCAGCAGGCCACACTGATATGATATGCCCTACAAGGGAACCAGAGAAGAGGGACAATGGACATGGGACTTGAAGGAgagttgtgtgtatatactgacAATTTGCaaactgtatttaaaacaaaaaaaaaatcaagaaatgcCTTCTTTGACTTGCAAGTGttattgttttgtcttttgttttttgaatgACTGCTGCACTTATTTGTGAGAGGAAAATGTTCCTTGCTGAAAACTATTGGTCAAAGCTATTTTTCTTGTCCTATTAATTTGTGCATATTTTATTCATCTGGCCCCAGATTATGAgtgtttctaaaaataatcagataGTACGGGTCACTTCAGAATTTGCCAAAGGGACATAGCTGGTAAAGACCTGCACTGAGTTTTATGACTTGAatagaacaacaaaaaaaatcaacatattTTCAAGGTTCAAGTACAACTTCTGCCTCTTTGTAGTAATATTATTGCCTCCAAAGCTTTTTCAGCCCCTTTCGCTGTATGTTAGTGTTTATTCCAAGAGCAACGTGACTTTATTCTAAAGGAGGGATGACTTTTCTTTAATCCTTCATTTTTGCTAACATCCATCTTCATTATAAGTAGGTCAGGGCTTGTATTGTATATtgcactgtaaaataaagctCAGTGGCATGTTATGAACAGTATGTTAACATGATGGAGATGCTTGCGTACAGACAAAGAAAAGTTTGGATGTTCTCCAGGTCCTATGCAGCATGTCGAAAGACAGATTCTCTTAACACAGCTTAAAGTATATGCAGATTAAGTAAAGAAACCAAGAACTCGTATGACTGTCTGTGCTCTACTGCATTCAATGTAGTGTTGTCACACCTTTCAAACAACGCTCAGAGGCAGATGATAAATTGCAAaaatactgattttatttaacagaattTATTTCTTTCAGATAATTATTGAGTTCTTTTTACCATCAGCTGCAAACATAAAGCAAACATTATGATGGCACTCCACtcagtatgtattttttttaacccaacaAATTTTGCCACAGAAtctattttgtcattttgcagaATGAAATAGCAGCTTCAGTTTTCTCTCTAACTCAGGATCCCATGTTTATGCACGGGATTTATGCAGGGACTTATGCATTGGACCATTGACTTTCCTTCTTCATTTCCTTTTATAAGGGCTCATCGATTTTGAACCTCTTCTGAGAGTATAATCCTGTCCTGACTATAACAGATTTTGTATCTCtagtatttgtttaatatttattatttttcaaaatcgCATTACTCTCAgaaatgaatcaataatgtagatgTTCTTGCATTGTCCTTTCTGTCCTGGCATACActtcttccacttttttcctgcTACACCTCTACACCTACACTGCTGCTACTGATGCTAGGTAATTACTAAATTGGCTGAACAGTGTAATGCAAGTGTATTACCAAATTGAAGTGGTTGTGTAAGCCagtgaatttatatttaattgttattttaggAGGCTGCAGTTCAATAAAAAACCGTGCCCTGCTCTCAGGGCCAAACAGAGAATCATTACTTTGTGGTGTTAAGGACTGTTTGGTCTGTCCCTATTAAATACAAGTTGTGTAAATAACTCTGTTTTTCTGACACTGTTTATGTTTCATGTATAAACTTTAATGTTATTACACAAATCAGTATGTTCTGATATTAATCATGAATTACCAACTGCCTCCTGGTGGATTGTGCTGCTTTTACTCACAAATACTAATGCAAAAAACACATACCTTAATAATATATACCTGTGGTTGAGTCGGTGAAGTCTCTCAGACACCAGCTGTAGTAAATTGCAATATGCCTTATAACAGTTGCATTTTCAATTTCACCAATTtgcgtttttattttaaattatgcaGACCAgagaataattttatttcagtttcactATGGGGGTGATCAGTTTCTGTTGTATAATGTAActctttatttgttgtttttggtcAATGcattcaatgatttttttttttttttttttttttcagaatatgtTAAATAGTGTATGTATACGTGTTGATATCATCAAACTGGAGATGTAATGATTCAGAAAGTTAAGAAGCAGTGCAGGTTAAGAGTTAAGAGACAGTGTTTTGGGGAGGGATTGTGAATATGTGGTCCTGCAGTAAGTAAATGAGAATGACTGATATTGATAGATAAATGAACactattatattaataatgagAGACAGGATGGGTCATGTCTTTGCATTTCTTTGTAATCGTCTCAGTGTTTCACAATGCATTGTAgtttaaagaaatgaataaacaggTAAAATGGAcgattaaataaaattttgtatCATA

Function

GO:

id name namespace
GO:0044206 UMP salvage biological_process
GO:0044211 CTP salvage biological_process
GO:0016310 phosphorylation biological_process
GO:0005524 ATP binding molecular_function
GO:0016773 phosphotransferase activity, alcohol group as acceptor molecular_function
GO:0004849 uridine kinase activity molecular_function

KEGG:

id description
K00876 udk, UCK; uridine kinase

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU154619 lncRNA upstream 125480 11548962 ~ 11552031 (+) True G130960
XR_004578615.1 lncRNA upstream 318131 11355449 ~ 11359380 (+) True LOC117597850
XR_003402857.2 lncRNA upstream 729165 10944657 ~ 10948346 (+) True LOC113527270
TU154234 lncRNA upstream 760886 10916337 ~ 10916625 (+) True G130618
TU154227 lncRNA upstream 766136 10911164 ~ 10911375 (+) True G130611
TU154767 lncRNA downstream 20041 11716832 ~ 11717885 (+) True G131061
TU154974 lncRNA downstream 284974 11981765 ~ 11988425 (+) False foxp3a
TU154975 lncRNA downstream 296028 11992819 ~ 11993039 (+) False foxp3a
TU154976 lncRNA downstream 297623 11994414 ~ 11994800 (+) False foxp3a
TU155067 lncRNA downstream 520213 12217004 ~ 12217214 (+) True G131279
XM_026921520.2 mRNA upstream 43667 11622310 ~ 11633844 (+) False LOC113530800
XM_026922330.2 mRNA upstream 43667 11622310 ~ 11633844 (+) False LOC113530800
XM_034306312.1 mRNA upstream 68954 11597781 ~ 11608557 (+) False LOC113538016
XM_026924198.2 mRNA downstream 92 11696883 ~ 11699368 (+) True magoh
XM_034306353.1 mRNA downstream 8756 11705547 ~ 11714032 (+) True porcn
XM_026921446.2 mRNA downstream 18152 11714943 ~ 11716674 (+) True spryd4
XM_034306594.1 mRNA downstream 41548 11738339 ~ 11763591 (+) True col2a1a
XM_034306595.1 mRNA downstream 41548 11738339 ~ 11763591 (+) False col2a1a
XR_003403321.2 other upstream 43667 11622302 ~ 11633844 (+) False LOC113530800
XR_003403311.2 other upstream 43667 11622310 ~ 11633844 (+) True LOC113530800
XR_003403352.2 other upstream 43667 11622310 ~ 11633844 (+) False LOC113530800
XR_003403367.2 other upstream 43667 11622310 ~ 11633844 (+) False LOC113530800
TU154218 other upstream 803494 10870134 ~ 10874017 (+) False mrpl55
TU154756 other downstream 8864 11705655 ~ 11709432 (+) False porcn
TU154757 other downstream 8864 11705655 ~ 11709432 (+) False porcn
TU154760 other downstream 8864 11705655 ~ 11707961 (+) False porcn
TU154763 other downstream 12663 11709454 ~ 11710545 (+) False porcn
trnad-guc_1 other downstream 685208 12381999 ~ 12382070 (+) True trnad-guc_1

Expression Profile