RNA id: XM_026914932.2


Basic Information

Item Value
RNA id XM_026914932.2
length 3455
RNA type mRNA
GC content 0.44
exon number 3
gene id cdkn2c
representative False

Chromosome Information

Item Value
chromosome id NC_047602.1
NCBI id CM018548.1
chromosome length 30442583
location 11436385 ~ 11447884 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

GCTTCGTGTGAATTCATGTTTGACACTTTATCTTCCTGAGACTTTGAAAGGCAACAGTGAAGTGCATCTCAACGTCTCCTTGACGTTAGCACAGCTCTGAGTCCCGCCTCTCCCTGAGTCTGTTAGTCAAAGTGGGCGGAAGTTTCAGTCCTTTATTTCAAAAAATGAGTGATGTCAAACAACAGGagctgactctctctctctctctctgtctgtctgtctctctctctctctttctctctcaacgTCAGCTGCATATAAAGCAGCTTTTCGAATTAGCCACATCAGGAAAATGTTACGACGGTCCGCGGATGGAGGAGCTTACATGATGCTTCAGCTCATTCAGGTGGTCGACACAGTGGGATCTTTCAGATGACTCTGCACGGGACAGCATTGCGCTATTCTCCAGGCTGCGTAACGTAGCGAGATCAGCGCGAGCCAGCGAGCATTGCGTCCTCACAGCATGAGTCGCTATCGCAGTGACACAGAACCGGACTCACTCCCAGCAAACTCGTCATCTGTGTAATTTATTAGCTCGGGACAGCTTACCTGCTCGACTGTAGGGGTGAAAACTCAGCCAGTGTAGACGTAAGCGAGCGCGCGGCTGCTTAACGACACTCAACCGACTGCGGCTCAGTTTGAAATGGGCGGGAAGCTGCACGCAACTCTCAAGCACGTCCCTTCTAAAAGTCATTGGACGGCTGCAGCTCGGCGGCGCTCGTAGCCTCATTTGTTCTTTCATCCGTTTTCAGACGTGCGATTGGAGGTATCGAGAGGCTCCTGTGAACTCTAGATGACAGCAATTGGATGgcaggggattttttttaacagcgtGCACCTGCATATCAGGACTATTTGAAGTGTATTTGTGACCTGCAGATAAGCTTTAGATCTCTCAGCGCTGCCTGAGGGGCGCCAATACTTAATCTGCTGCTGCGTCATGTCATTCGGGTTTCATCTGGAGCGATCTGTTTTCTAGAGGGTTtccagtatttttttgttttttgttttttttcttcggAGATCATTAAGTGGATGCAAGAACAGCACGGGTTGTCCTAGCACGAGCCAGGCTGCTGCCCGGGTACAGCGCGTGAAGCAGAGACAACAAGGAGGCAGGAGGGAGAAATCGTCATGCTGAAGTTGGCTCGTGTGTGATTGTACAGCACGTTTTCGGCCGGTGGTGACTAAAAGCCTCCTCCTCGGATAGAGATGGCGTGATATCCCTGTTTTTCCGCGCTGAGAGCGATCGCTACAGTGGGACGATATTAAAGCTGAGATCATGGCCGAAGCCCCAGATGTAAACAGGTTGTCCACTGCTGCTGCGAGAGGAGACTTGAGAGAAACTGAGGAGATACTGGAGAGCAACATTAACGTGAATGCGAAGAACAAATTCGGCAGGACAGCACTGCAGGTGGTGAAGCTCGGCTGTCCCTCTGTAGCGGAAGCCCTGCTGCGCGCGGGCGCTGATCCAAACGTGCCCGACCCCAGCGGAGGACTGACGGTGATGCACGACGCGGCGCGCGAGGGCCACGCAGACACGCTGCAGGTGCTGCTGAGGTATGGAGCAGACGCCAGTCTCCAGGACGACGCTGGGAATCTGCCGCTGCATCTGGCGGCGCGCGAGGGACATCAGGGCGCAGTGGAGCTCCTGGCCCCGCACACCGCACATCCGCTTCTGCCCAACCATGCGGGTCTCACGCCCCTGCAGCTGGCATCACAACATCACAGAGACGATACGGCACGCTGGCTAGAGAACTACCGGCATGTGCCTTCACAACCAGAGTAGGTAGAGGAGCGCCCGCTTTGTGCTGTGACAGAGGTAGTGTAGAAAAACATGCTGAATGGGCGTTTTGGTAGTATTCGAGAAATATTCAGCTAACTACctcttttttatattgtgaAATCTGGGCAGTGAAGCTGCGAGGAAAGAGCTGGAACGAAGGCTATTTTGAAGCACACACGTTTTGAAGGCCAAACGTTTTTACAGGCCTAGGCTGCTTTCTGTTAGTGTCCCGTTACATATGATAATCTTTCATCAGTGTTTCAATTGGTTTGATTTTTTAAGGGTATTcaaattggaatttttttttttttttttattaaggtgTCACATGTCATTAGACTACACTCACTACTCCTCTAAGAAATAAAGGTTCCAAAcagtacttttccttgtcgGTGGTTGGTACCATCATGGGTGCATGTTCTATACCCTATTTTACCCCAGAAAGTTCATGTAGTGTACTTTTGATTAGCTTTTACAATAAAATAGCATTAAACTGTACATTTCTTTGTCACTGGCATGGTACCATTAAGGGtgcatttaatatatttttaatcttttgacCTGGACACGTGAATACAgtatctttaaaatgatttaaggtaaataaaaatggactgaaattagtttttagagtaaaattttaattatatgcaCGTTTCTAGGTCAAAGATACATACAAAAGGTGTACATTTGAGAGTATCACCCCAACCATGAGGAAAGGTGCAGTTTAGTAGCCTTTTTTCTGACCGCATAAGCCTAGAGTAGTAGTTCTTATGcatcttaaattattttttaaaggtttctataagtaaaatatacatagCCTCCTACTAAATGTAGGCTTCAATCCTTTACCATTtccccttgatggtaccactaCACAGAAAAAGTAGTCTAGTACCTtgatttctgagagtgtacagagtatgatataacaataataataataataataataataataataataataacaataataataatggcttcATGTGGTGTGCACTATATATAATGCATAATCACTTGCCCATATATGTCCAATTACCTGCcaaatttgaacattttcaaGCCAGTTGTGAATTTTCTTCCAGTGAGTGTGATTGCTTTTCAGTGAGTGTAGCCCATCTGATGAGCGAAAAAATCCTGATGTATCAAAGATCAGAACTCATTCCTGCTTCGAGATCTTTCTCTGCCCTGGTTTACTGAAATGATTGCACTATAGGTCTCTGAAGGCCAGAAGCAtgtctccagtgccagcgctttgATTCCTCGTCCTTTTTTATTTGCTTCCGTTTGTCTAATAAATTGCACTTTTGCTTGTagataaataatgcatttttttgatacttgtaaaactgtaactgtgaacgaatgtgtttttttgttgttgttgttgctgttgcaaAACAAGACATTGTATTTTCTCAGAAGAAACCAAAGACAGTCGATACAcgatttccaaaaaaaaaaaaaaaaaacagcatcccTGGCTTAGCTTGTGTTTAGACTCAGTGTATTTCAGTTTGTCTTATTTAACTCATCTGATTCCCAACATAGTATTAGTCAAAATGCCATATATTAAATTGGATTAAGCCTACTTGAACGTCACTAATTGTTGTATCATTTAATTATATGAAGAAATAAAACGGTCGTTTTAAACGTG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
XR_004578615.1 lncRNA upstream 82655 11355449 ~ 11359380 (+) True LOC117597850
XR_003402857.2 lncRNA upstream 493689 10944657 ~ 10948346 (+) True LOC113527270
TU154234 lncRNA upstream 525410 10916337 ~ 10916625 (+) True G130618
TU154227 lncRNA upstream 530660 10911164 ~ 10911375 (+) True G130611
TU154225 lncRNA upstream 531828 10909893 ~ 10910207 (+) True G130609
TU154619 lncRNA downstream 101078 11548962 ~ 11552031 (+) True G130960
TU154744 lncRNA downstream 230019 11677903 ~ 11689674 (+) False uck2a
TU154767 lncRNA downstream 268948 11716832 ~ 11717885 (+) True G131061
TU154974 lncRNA downstream 533881 11981765 ~ 11988425 (+) False foxp3a
TU154975 lncRNA downstream 544935 11992819 ~ 11993039 (+) False foxp3a
XM_026922776.2 mRNA upstream 153117 11219554 ~ 11288918 (+) False elavl4
XM_026927870.2 mRNA downstream 140940 11588824 ~ 11596613 (+) True si:ch211-198n5.11
XM_034306312.1 mRNA downstream 149897 11597781 ~ 11608557 (+) False LOC113538016
XM_026932941.2 mRNA downstream 150026 11597910 ~ 11608557 (+) True LOC113538016
XM_034306314.1 mRNA downstream 150468 11598352 ~ 11608557 (+) False LOC113538016
XM_034306313.1 mRNA downstream 151073 11598957 ~ 11608557 (+) False LOC113538016
TU154218 other upstream 568018 10870134 ~ 10874017 (+) False mrpl55
TU153993 other upstream 878474 10556518 ~ 10563561 (+) True zmynd12
TU153960 other upstream 1083720 10357946 ~ 10358315 (+) True G130390
TU152708 other upstream 3129379 8307164 ~ 8312656 (+) True G129247
TU152202 other upstream 3470286 7968235 ~ 7971749 (+) True LOC113526371
XR_003403321.2 other downstream 174418 11622302 ~ 11633844 (+) False LOC113530800
XR_003403311.2 other downstream 174426 11622310 ~ 11633844 (+) True LOC113530800
XR_003403352.2 other downstream 174426 11622310 ~ 11633844 (+) False LOC113530800
XR_003403367.2 other downstream 174426 11622310 ~ 11633844 (+) False LOC113530800
TU154756 other downstream 257771 11705655 ~ 11709432 (+) False porcn

Expression Profile