Gene
RNA
| Item | Value |
|---|---|
| RNA id | XM_026924198.2 |
| length | 722 |
| RNA type | mRNA |
| GC content | 0.43 |
| exon number | 5 |
| gene id | magoh |
| representative | True |
| Item | Value |
|---|---|
| chromosome id | NC_047602.1 |
| NCBI id | CM018548.1 |
| chromosome length | 30442583 |
| location | 11696883 ~ 11699368 (+) |
| genome version | GENO_Phyp_1.0_2019_striped_catfish_Genome |
| species | striped catfish (Pangasianodon hypophthalmus) |
| id | name | namespace |
|---|---|---|
| GO:0000381 | regulation of alternative mRNA splicing, via spliceosome | biological_process |
| GO:0006417 | regulation of translation | biological_process |
| GO:0000184 | nuclear-transcribed mRNA catabolic process, nonsense-mediated decay | biological_process |
| GO:0051028 | mRNA transport | biological_process |
| GO:0016607 | nuclear speck | cellular_component |
| GO:0005737 | cytoplasm | cellular_component |
| GO:0003723 | RNA binding | molecular_function |
| id | description |
|---|---|
| K12877 | MAGOH; protein mago nashi |
| RNA id | RNA type | direction | distance | location | representative | gene id |
|---|---|---|---|---|---|---|
| TU154744 | lncRNA | upstream | 7209 | 11677903 ~ 11689674 (+) | False | uck2a |
| TU154619 | lncRNA | upstream | 144852 | 11548962 ~ 11552031 (+) | True | G130960 |
| XR_004578615.1 | lncRNA | upstream | 337503 | 11355449 ~ 11359380 (+) | True | LOC117597850 |
| XR_003402857.2 | lncRNA | upstream | 748537 | 10944657 ~ 10948346 (+) | True | LOC113527270 |
| TU154234 | lncRNA | upstream | 780258 | 10916337 ~ 10916625 (+) | True | G130618 |
| TU154767 | lncRNA | downstream | 17464 | 11716832 ~ 11717885 (+) | True | G131061 |
| TU154974 | lncRNA | downstream | 282397 | 11981765 ~ 11988425 (+) | False | foxp3a |
| TU154975 | lncRNA | downstream | 293451 | 11992819 ~ 11993039 (+) | False | foxp3a |
| TU154976 | lncRNA | downstream | 295046 | 11994414 ~ 11994800 (+) | False | foxp3a |
| TU155067 | lncRNA | downstream | 517636 | 12217004 ~ 12217214 (+) | True | G131279 |
| XM_026926870.2 | mRNA | upstream | 92 | 11677511 ~ 11696791 (+) | True | uck2a |
| XM_034306529.1 | mRNA | upstream | 92 | 11677812 ~ 11696791 (+) | False | uck2a |
| XM_026921520.2 | mRNA | upstream | 63039 | 11622310 ~ 11633844 (+) | False | LOC113530800 |
| XM_026922330.2 | mRNA | upstream | 63039 | 11622310 ~ 11633844 (+) | False | LOC113530800 |
| XM_034306314.1 | mRNA | upstream | 88326 | 11598352 ~ 11608557 (+) | False | LOC113538016 |
| XM_034306353.1 | mRNA | downstream | 6179 | 11705547 ~ 11714032 (+) | True | porcn |
| XM_026921446.2 | mRNA | downstream | 15575 | 11714943 ~ 11716674 (+) | True | spryd4 |
| XM_034306594.1 | mRNA | downstream | 38971 | 11738339 ~ 11763591 (+) | True | col2a1a |
| XM_034306595.1 | mRNA | downstream | 38971 | 11738339 ~ 11763591 (+) | False | col2a1a |
| XM_034306367.1 | mRNA | downstream | 66672 | 11766040 ~ 11791173 (+) | True | cry3a |
| XR_003403321.2 | other | upstream | 63039 | 11622302 ~ 11633844 (+) | False | LOC113530800 |
| XR_003403311.2 | other | upstream | 63039 | 11622310 ~ 11633844 (+) | True | LOC113530800 |
| XR_003403352.2 | other | upstream | 63039 | 11622310 ~ 11633844 (+) | False | LOC113530800 |
| XR_003403367.2 | other | upstream | 63039 | 11622310 ~ 11633844 (+) | False | LOC113530800 |
| TU154218 | other | upstream | 822866 | 10870134 ~ 10874017 (+) | False | mrpl55 |
| TU154756 | other | downstream | 6287 | 11705655 ~ 11709432 (+) | False | porcn |
| TU154757 | other | downstream | 6287 | 11705655 ~ 11709432 (+) | False | porcn |
| TU154760 | other | downstream | 6287 | 11705655 ~ 11707961 (+) | False | porcn |
| TU154763 | other | downstream | 10086 | 11709454 ~ 11710545 (+) | False | porcn |
| trnad-guc_1 | other | downstream | 682631 | 12381999 ~ 12382070 (+) | True | trnad-guc_1 |
