RNA id: XM_026925790.2


Basic Information

Item Value
RNA id XM_026925790.2
length 2615
RNA type mRNA
GC content 0.43
exon number 9
gene id enkd1
representative True

Chromosome Information

Item Value
chromosome id NC_047602.1
NCBI id CM018548.1
chromosome length 30442583
location 17905804 ~ 17916639 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

tagcaaaattaactagttAGCAATGCGATATTAGTTAGCTAACACTACCTTGCTAAGATACCGACTAGCTAATATTTGTGTAACTTATAAAATATTATCTCAATATTAATATGATCTATTAATATGATCTACCGCACGGCTGCCCCTGTCGCTTTAAATCGTTGCCATGGAGACGCATTTGGTTGGTCTCTGCGTCATCaagctgcgtgtgtgtgctgccGAGCCTAAGAACGGTTGACTAAaagAGTCCAGCCAAGTCTGCAAGCAAAGTGGTGGACAGCATTACATTACTGCATAAACACCCACCATCCACCTGAGTTTTCATGATGGCTGCTGCCAAAGAATTCTGACTGCACAGATGTGCAGTCATGTCTGAAGGACTATCTATGATCTCTGGTCCCATTCCACCAGATCCAACACTTTTCCCTGAGTGCTACATACGACCTACCTCTGCTCGGGGTCACCTGGAAGGAAATTCTAAAGTTAAATGTTCAACCTTGCTGAATGGACCCTTAGCTCCAGATCCTGCATTGTACCCTGAGTGTTATAGTGCCCATGCTCCTCGTCCTCCTTGTGTTGGCCCTAACGCAATACATATTCTTGAAAGAAACCTGAAAGGAGAGGTGGGAGCCATCCTTAAACTACAGGGTATCTTACTGAACCCCACCCCCATTCAACAAAAACCTGCAGTTCGTGATTACAACAAAGAGAATGTGCGCAGACTGAGGGAGATCCAGAAACAGTTCCATGAACAAAAGGCACAGAAAGAGCGTGCAAAACCGGTGCCTGTTAAAGCCCTGCAGACCTCTCACAAATACAAGCACGTCCCCTCTAGGGTCATGGCCCATTTACAAGAGAAAAACCAGCCAAAGAAGCCAGAGTGCCAGAACTTTCTGAAGGCTCACTCTCTCTGTGGTTCTGGTGGTCAGCCTCAGTCTCGTCAGTCTCTTTCTGGAGTGAGCCCAAACTCTCACATAGAAGACTCAGATTCTGAGGTCCAAGTGAGAAGACACAAGGTCAACTTTGTGTTGCATAATGCTCATGCTGCAGGAAAAACCACACTGAGGTCTCAGTCTCTACAGAACCAGTGTGACAAGCCACTAAGTGCATTAAAGGGCTGTGTGCCAAAGTAtttggaggaaagaaagaagcagtGGCACCGAGAGGCAGAGGAAAGGAAACAGAACATTCCTGATCCTTCCATACCTGCTGGACACACTCAGATgtcagatagagagagacaggaaactTTCCAGTCCCTCAAAGAAACCCACAGGTCTCTAGTGGGTGAGCTGCTCTGTCTACCAGTTAGGGCTGATACACTAAGTGTGCGTTCTCGACGTGAAGAGCTTGACCGCCGTCTCTCTGAAATCGAGGAGGCCATCAAGATATTCTCCCGCAATAAAGTCTATATCAGAAATGACTCCCGACCATGACTCCTGTGACCATGCCAAACCTTTGTTATTTGTCCATCTTGAGCATAGCCTACTTCATGCTGCCAATTTTGTCTTGTCTAATTTATACCAGTTTGCCAGGGCATCCCAGCTAGGATGTATTCCTCAGCACACttctaaaaagaaaatcacGCCCACAGAAAGACATTATGATCTTGGCAACAGGGAGCTGCTAGCAATAAAACTGGCACAGAAAAGAGTGACGATGTTGACTGAAGGGAAATGAACACCCTCTTCACACCTTGTTTGAACCTTGTATAGGTGACATTACTAGGAcaactttttttcatttcagaaacattactaaataaagaaatataatattgGTACACAATGTGGAAAAACTAGttaatgcttttgttacctctaagGTGGTCCCGATTTTTCCACACTCCAAGTAAAATTTGGAATTGATTTCAAAATTCTAATGATATATAATCTATAAAGCACTAATGATCTACTCCCACAGTACTTCAGAGAAGTACGATTATGATCTATCACACTTGATTCAACTGCAGGTTTTTTAGTAATATCTAGAATAATGAAAAGTGCAATagggggcagagctttttcCATCACAGAAAGTTTTGataaactgggatgttttgaTGTTGTCAGCCCACTCTCTGTTTGTTGACAGTGTAGTCATGGGGCACTTTATCTCTCAGGGTGCCCTTGTGCCTGTGTTACCTACTGACTTTCCCTTTTAGTTATGTGTCAGACCTTGACCTGCCAGAGTCCCTACTTACTAAAGAataagagcatacctaataagCATACCTCTTCTACAGGTATATACTGTTGTTATGTGTCAGTGTGCTTGCATTTGTGTGCTCCCTCTCTGCTCCTTTTTCCACTGTTTGTTTGGTGTATAGCTGGATCCCTGTGGCAATCACCATTAACTGGTTGACAAAACTTGACCAATGGGAAGGCAAGAACTCAACCAAAAGAGTTGGAGCTATCGGTTTAAAAGCAGCACATTGACAAATACAGCCTAGTGTGGTCCATTTTTTGTTATGTTCATTCCTTTGGCTCCATACATGTTCTCTCTCCTAAGTGAGACTAGTTTCCCTGTTGTCCTGGTTTCATGATTGTCCTGTTCTTACTGTCTGTAAATGCCAGTCCTGCTGTTGTGTGTTGGAAATAAAAGCTATAACCATA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU158963 lncRNA upstream 3899 17901705 ~ 17901905 (+) True G134557
TU158959 lncRNA upstream 8205 17897388 ~ 17897599 (+) True G134553
TU158957 lncRNA upstream 9362 17896233 ~ 17896442 (+) True G134551
TU158956 lncRNA upstream 9873 17895711 ~ 17895931 (+) True G134550
TU158946 lncRNA upstream 29077 17876374 ~ 17876727 (+) True G134540
TU158992 lncRNA downstream 30692 17947331 ~ 17947962 (+) True G134586
TU159027 lncRNA downstream 115286 18031925 ~ 18039306 (+) True G134604
TU159020 lncRNA downstream 157496 18074135 ~ 18084479 (+) True G134598
TU159097 lncRNA downstream 205240 18121879 ~ 18122161 (+) True G134655
XR_003403399.2 lncRNA downstream 353857 18270496 ~ 18271764 (+) True LOC113533180
XM_026925239.2 mRNA upstream 284158 17611386 ~ 17621646 (+) True lhx2b
XM_026925238.2 mRNA upstream 456742 17411108 ~ 17449062 (+) False crb2b
XM_026925237.2 mRNA upstream 456742 17411109 ~ 17449062 (+) True crb2b
XM_026925931.2 mRNA upstream 553214 17349316 ~ 17352590 (+) True seta
XM_034306703.1 mRNA upstream 823854 17061058 ~ 17081950 (+) True LOC117597835
XM_026925792.2 mRNA downstream 11785 17928424 ~ 17939695 (+) False polb
XM_026925793.2 mRNA downstream 12182 17928821 ~ 17939695 (+) True polb
XM_026925794.2 mRNA downstream 114336 18030975 ~ 18048321 (+) False vdac3
XM_026925795.2 mRNA downstream 114337 18030976 ~ 18048321 (+) False vdac3
XM_026925786.2 mRNA downstream 171302 18087941 ~ 18118075 (+) True plat
TU158711 other upstream 608921 17296111 ~ 17296883 (+) True G134341
XR_003402556.2 other upstream 1170469 16716133 ~ 16735335 (+) False bicdl1
TU158261 other upstream 1305219 16580453 ~ 16600585 (+) False mtmr3
TU158254 other upstream 1311401 16580453 ~ 16594403 (+) False mtmr3
XR_003403426.2 other downstream 114336 18030975 ~ 18048889 (+) True vdac3
TU159255 other downstream 519571 18436210 ~ 18461934 (+) False pbx3b
TU159806 other downstream 1570848 19487487 ~ 19502643 (+) True G135287
XR_004578531.1 other downstream 2305776 20222415 ~ 20442191 (+) True LOC113533440
XR_004578533.1 other downstream 2305776 20222415 ~ 20442191 (+) False LOC113533440

Expression Profile