RNA id: XM_034306274.1


Basic Information

Item Value
RNA id XM_034306274.1
length 2109
RNA type mRNA
GC content 0.49
exon number 10
gene id serping1
representative False

Chromosome Information

Item Value
chromosome id NC_047602.1
NCBI id CM018548.1
chromosome length 30442583
location 1202728 ~ 1222668 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

TCTCTCTCCGCCTCAGGCTGCACTGGGTAAGCTCGTGGCGCTGTCTCTGTCACGTGATGAACGAACGCCTCAGACCCGAAGACTCGTCAGCAGACGTTGCACCATCATGTTGCGTTGTATCGTTCTCCTGCTCTTTTGGGGGttctcctcctcttctcctacCATAACGCTTCTAGTGGGCTCGCAGTTCAGGTTGCAATGCCTTACTGAATTTGACCTGCTGTCTCCGGAGTACTCATGGAGCTTCATACCTCAGCTGAACGTAGACCAGGGTGTGAAAATCCCCTTTACTCCGCTCAATCACACAGGAGAAGCGCTGGAGCTGAACCCAGTGGAGCAGCACCATGCTGGAACATATAAGTGTGTGGTTAGGGGTATTTCTGAAAAGGGAGCCATGAAGGTGAAGAGGACCTTCCAAATCTCTGTCACTGAGAATGTACCGTTTATAAGATGGCAGGTCCTTGAAGGAACTGAGGGAGAACCAGCGATGCTTCCGTGCATTTCCTCCTCTGAAACAGTCAAGAGCTTCGATTCTGCATTGGTCAAATGGTTCAAGATAAAGGAACTGGAAAATAGTTTTGAAGCTCAGGAGCTCACACCTGTTGGAAGAAGCCACAGCTCCATTAAAGGGGAGGAGATTAAAAGGCGAGTTTACTGGGCGTCTGATCTTAAGGAGCCGGACTGGTCCATTGAAATCGACAGTCTGGAATTGGACGATGAATCTCTGTACCGCTGTGACATCACAACGGAGTCACACACAGAATCCTCGTTAATGGAGCTTGTGTTACACCGTGCCCCGCCCCCTCGCTGTTTAAACCATACAGACCCTTGGGAGGCGTGTCCTGATCCCGACAGCAAGTCGTCGGAGGCGATCCTGCACGAGTCTCTGACCGAGTTCTCTCTTAATGTCTATAAAAAAGTGAACACGATGACACCTGAACGTAACCTGCTCTTCTCACCAATCAGCATCACCATGCTGCTCTCTCACCTGCTGCTgggaACTCGAGGACAGACAAGAACTGACTTGGAGCGAGGTCTTCTCCTGCCCACTTATTTCTCCTGCATTCATTCTGAAATGAAGAAGCTGAACAACAAGATGAAGGATTCGATTCTCGTAGCCAGTCAGATCTTCTTCAACCGAAAGCTCAAACTCCAAGAAGCTTTCGTCAACCAGTCGCAGGAGTTCTACGACTCCACGCCCCAAAAACTGACCAATAACAGTGAGACGAACCTGAAGCTGATCAACGACTGGGTGGCGAGCAAATCGCAGGACAGAATAACAGGGCTGGTGGATTTCTTAGATGAGTCAACTGAGATTATTTTACTCAATGCTGTTTACTTCATTGgtaAATGGAAAGGAACGTTTGAAGTTAAAGATGAAGTGTTTACAACGTTTTCGAAAGGGCATCTGTCCGTCCCGACTCTCTACAGCTCGAACTTCTATCTGGCCACAagttacatacacacactcaaagccCATGTGGGGAAATTCGATCTGACAGGGAAGAACAGTCTGTACATCCTGCTGCCCATCTCCAAGGGTAAAAAAGGGCTGCAAGCCATGGAGGCATTGCTGACTGAGATTAACATCAGAGACATGGTGAAAGAGATGGCCTCCGTCAATCCAACGTTGACTGAAGTGACGCTGCCGAAAGTGAAACTCATGGTGAACACAGATCTCCTCACGCTCCTGAAGAAATTCGAGCTGGCAGGATTACTGGAGGACCCTAACCTGTGTGGAATGTTTGAGCAGAGTAGCTCCACGCCTCTGACTGATGCTCGTCATCGCGCTTTCCTCTCCCTCACGGAGAAAGGAGTGGAAGCTGTGGCCGCCAGCAGCATCTCGTTTTCACGCTCCTTCGGCAGTTTCGACGCCATGCGGCCGTTCGTCCTGATGGTGTGGAACGAGGACATCAACAACCCTCTGTTCATCGGGAGAGTTCTTAATCCAAAGCAGGATGAATAAAGCCAGAGGTCTTTGTGCTGAGAATTATTACACGACAAAGTAAAATGTGTAGGTTCTGAGAAGAATCATGACATAAGTAATTACCATGTGGCCTACAGCATCATCATATACTACAGCAACACAATAAAGTCTATCAAACTAAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU147745 lncRNA downstream 24189 1166724 ~ 1178539 (-) False G125005
TU147744 lncRNA downstream 30436 1166724 ~ 1172292 (-) True G125005
TU147575 lncRNA downstream 230989 970318 ~ 971739 (-) True G124863
TU147561 lncRNA downstream 239802 901023 ~ 962926 (-) True G124854
TU147563 lncRNA downstream 288102 905828 ~ 914626 (-) True G124856
TU147760 lncRNA upstream 7564 1230232 ~ 1230866 (-) True G125017
TU148737 lncRNA upstream 335798 1558466 ~ 1601407 (-) True G125850
TU148755 lncRNA upstream 431791 1654459 ~ 1654935 (-) True G125868
TU148765 lncRNA upstream 455155 1677823 ~ 1718996 (-) True G125875
TU148772 lncRNA upstream 469431 1692099 ~ 1793317 (-) True G125882
XM_034306755.1 mRNA downstream 67031 1115082 ~ 1135697 (-) False cabp4
XM_034306756.1 mRNA downstream 67665 1115082 ~ 1135063 (-) True cabp4
XM_034306789.1 mRNA downstream 101773 1082098 ~ 1100955 (-) True LOC113535044
XM_034306790.1 mRNA downstream 105003 1072745 ~ 1097725 (-) False LOC113535165
XM_034306791.1 mRNA downstream 105003 1072745 ~ 1097725 (-) True LOC113535165
XM_026928347.2 mRNA upstream 2984 1225652 ~ 1234425 (-) True igf3
XM_034306654.1 mRNA upstream 13770 1236438 ~ 1242966 (-) False si:dkeyp-110g5.4
XM_034306655.1 mRNA upstream 13770 1236438 ~ 1242966 (-) False si:dkeyp-110g5.4
XM_034306653.1 mRNA upstream 13770 1236438 ~ 1242966 (-) True si:dkeyp-110g5.4
XM_034306656.1 mRNA upstream 60033 1282701 ~ 1298053 (-) False soat1
TU147502 other downstream 476855 722755 ~ 725873 (-) False sap30bp
TU147500 other downstream 505610 688074 ~ 697118 (-) False itgb4
TU147499 other downstream 510489 686447 ~ 692239 (-) False itgb4
TU147377 other downstream 881595 302191 ~ 321133 (-) False lrriq3
TU147264 other downstream 1186367 14898 ~ 16361 (-) True G124658
XR_004578586.1 other upstream 79093 1301761 ~ 1338978 (-) False si:dkey-21p1.3
XR_004578587.1 other upstream 81343 1304011 ~ 1338978 (-) False si:dkey-21p1.3
TU148714 other upstream 398563 1621231 ~ 1623001 (-) False acbd6
XR_004578545.1 other upstream 780348 2003016 ~ 2017364 (-) False mutyh
TU148995 other upstream 906794 2129462 ~ 2132065 (-) False dmap1

Expression Profile