RNA id: XM_026929291.2


Basic Information

Item Value
RNA id XM_026929291.2
length 5956
RNA type mRNA
GC content 0.42
exon number 2
gene id amigo1
representative True

Chromosome Information

Item Value
chromosome id NC_047602.1
NCBI id CM018548.1
chromosome length 30442583
location 12390255 ~ 12396660 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

AGGATTAAATGGCGTATCAGGAGGATTCGGAAAGGACTGCATAGCTTCAGGAGAAGATAGACGTCTGAGCAGGTTATGTGAATGAAATCCGGGCTGCAACCGGAGCGTTTTTATGCATGTGAGAAAGGCTGAGCGAAAGCGCGCGACTGCTCATGCGCCCCGGCAAGTGAGTGCGCGTGAAGAGATGCTGCTCATCAGATAGTCAGTGTGGCGTCTGATCAGGGGTCGAGCACAGCTCATTTCTTCTCCTGTCACACACTGCATCTGCGAGCCTCATGGATCTTCGGACGCTTTGGCTAAATTGACATCTGAAATGGATTTATTCACATTTGCCATAATATGTCTCGCGGATTATAAGACCGGCGCTGAGCGCGTCCTTTCTTTACGTAATGTCGTAACTATTTGCGCATTTATCCTTGGCCGAGTTCAACtgcgataaaaaaaaaaaaaaagatctcgtGCTCGAAACGTTGTCGGGGCAAATTGGTTTTGTCTCCTGGACGAACACACCGTTTTTCTCTCGGTGTATCTCCATCTGGCTTTTGTTTCTGAATGGGAAAAGCATGGCACGTTACTGTGATGGGCAATGGATAAACAAACCCCAGCTCTGGGCATTATTTACATACAATCCTTGATGTATCGTAACCCGAGGCGGAACGTTCTGGAGctTATACTCTGCAGCTCCATCAGCTCACTCAGCTGATCTCTTCATTGCGTGTAAAGAAGTCGAGTACAGCTTATATCATCGTAAAACTAGATTTGACTCTTGAGAGAGTGGAAGATATGCCATCCTCCATGGAACTGTTCATTAAGTGGGCTGTCTGCACTTCCCTGGTTCTTATCCATATACCAGGGACCGACAGCTCAATAGTGAATTTCCACAAAACATGCATATGTGCCAGTAACATTGTGAGCTGCTCCAAAATGAACTTAACTACTGTTCCATCTGACCTGCCCAAGTACACAGCAGTGCTTGATCTGAGCTATAATGACATCACCAGACTACGTGCAGAGTGGACCACATACAAGCTCCCCAAACTCCACAACCTTTTACTGAGCCACAATGGCTTGCATTTTATCTCTACTGAAGCTTTTGATTATGTTAAGCACTTGCGCTACTTGGACCTGTCCTCTAACAGCATCCGCCAACTGGATGAGTACATTTTTGAACAGCTAGAGTATCTAGAGGTGCTCCTGCTCTACAACAACCACATCTCCCAGATTGACCGCACTGCCTTCACAGGCCTCAGCAAACTGCAGAAGCTCTATCTGAGCCAGAACCAGGTGGCCCGCTTCCCTCTGGAGCTGGTTAAGGACAAGACGCGACTGGAAAAGCTGAGCTTATTGGACTTGTCTTCCAATCGGATCAAAGTCCTCCCTATTCAAGACCTGCAGGACCTGCCAGCCTGGCTCAAGAATGGACTTTACTTCCACAATAATACGCTCATCTGTGACTGTGAGCTGTACAGCTTGATGGCACATTGGTATATGCGACGACTAAACTCAGCTGTGGATTTCAAAGATGACTACACCTGCATACTGCCAGGGCCTGATAAGAAAATCTTGCATGTTTTTGAGCTAAACGTGCATATGAACTGCAGCACATATAATGAATCAGTGGAGGAAGCCTTTTTGGAGCAGTCTCTGGTCCTCAAGTGTGATACACGGCATCGGGACATGTCCAAGACTTGGATGTTACCTGGCAATGTAGTAGTATCACCTGGAAACAACCAGACTGCTTTAGTTCTGCCAGACGGCAGCCTGGAGATCAGTTCAGTAAAACTCGAGGACTCTGGTCAGTACACCTGCTTTGCTGTAAGCGAATACCTTAATGAAACCCTGTATGTGTGGGTGAAGGTACATAACTTCACTCTTAATGGAAACAGCGAGACCCTCAATACAGCATACACAACTCTGGTGGGATGCTTGGTCAGTGTGGTCCTGGTGCTCATCTACCTGTACTTGACCCCTTGCCGGTGCTTCTGCTGTCCAGGACAAGGGAAGTCCAAGAACAATCACGAGGATAGTATTCATTCGTCTATGCTCAGTGCCACCCCAACTCACGAGGATCTGGCAACCAAAGCAGAGCCCAACAGGCATGTTGCCTTCATAGATCCCAAGGACCTGCAGGGCCAGAATGGGAAAGTGAATCGCAATGGGGAAGAGGAGCTGGAGGATGAGGCTAAACATgggaaaggaaagagaaagaaatcagtGGCAGACTCTATTAGCTCAGTCTTCTCTGACACACCCATTGTGGTCTGAATGGATCCTGTCCAGAGTTGAAACTGGGCTGCCTACTGTGATGGATGCAAATTGTGTGAGGTTTGTCCAGAGGCAATGAGTTGTTGAGACATCTTTGGAAAAAGAGCAGCAGAAATGCAGTTTGCACCCTTCAGCATGTGGCTAATTAAAGACACAGTGTTATATAGctttcctttgtgaatttgacAAGGACAAGTTAGAGAAGCCTTTCCAGCATTTTAATCTGTAGCACTTAAGTATATACTGTGAAAAGGTCTTGCCATATATAGTAAGTAGTAGTAACGTGTCACTGAGAAGTGGGGAAGGTCATAGGGAACATGGCAAAAATAATTTCTCCATGAACAGGCACTGGCAAGCCttaatatttagtaatatataAACCATATAAACCATATAATATGATTCTTAGACTGCTGAGAGTAGAAAGATTATAGCTTTGTGTCCTGTAGCCATTAATACTTACAATATTTATTCCTCCCTTCCCCAAATGCTAACGTGCCAGCAACACCACTTTATATATAGACTTCAGTCATGAGTCATTGCTAGAGGAGTGGCATGCCATTAACCACCATTACGGTGAATGCTGAACACTGTCAAGTGCAGTTGAAAGGACGTAGCAAAGATTTGAATGTGCTTGTAGAAATTCAGCACCTCTAAGCTTATCAATACGTCAAACCGTAGAGGAAACCTGGGTCAGTTTTAATAGCAAAGTAAAATTGGAAAAGAGAAAATCCAATTGTTGCATTACCATTACATTTAtattggttgttgttgttgttaataaggAATAAGCTGTAAAGTGAATAGGTGACATTAAGCCAAAGTTCAACTTGCATTGCAATTCCATAGACACTTGCAATAATACCACAAGACTACAGCTGTTGCTGAATTTTAGAACAAAACATGCTGGATTTTAGGACAAAATGCTAAAACTTGTTTTGGATAGATGTCGTCTTCTAGCATCCTGTCAAGTTTGGTTATTGAAAGTTTGGGTAGTTGTAGCACCAAAAATTAGAACTGACATGCCGGCTGCCATGATCCCCAAGGATCACTGAAAATTAATGCCAGATGCACAATAGCATTTCTTGTAATCCCCAGCTTAAGAGTAAATTAAATCAGCATGTTGTGTGCACAGCAAATGTATACCTTAAACAATGGCTCGTAATCACATTATGGCTGCCATTCTCTGTCAGAAAATATGGCCTATTATTTGCACAATGCCATTTGCATGAGGCTGTCTGTCATGACaaccagagagacagagacatttCCTGAATGCTAATAACCTCTTAAAATAGAATAAGGCATCTCTCTGCTTTCCCCAATAAACCAGGACAGTCCATAATGCAAAAACCAAAACTGTTTTTCAAACATCTCTGATTCTCAAACCTTCTCAAGTTCAGGGTTATTTGCATCTTTTGCTAGCTTTAGTCATTGCTGAGTCACCCATTGTCAAAATGTTTTCTAAACGATTGGGCCCATCTTTAATTATAACCCAAGTCCCCAAAAGATGCTTGTAATCTTGATCAGAAAAAAGGACAGAGCACTGGGTTTATTTTTTGGCAAAAGAGTCTAATCTGACATATTCATTATGCATgtcactatccagtgtcacatAGGCTTTAATGAATGTGATAAACACATTGGAAGAGTTCCTCAGATATAGCacacaaaatgaacatttcagaaTGTTGGTTCAACGTGTATTTCCACACAACATGCATTCTATGTAGCATTTAGCTGTCATACCATGTAACTCTATCCCGACACCATAATAGTTTCAATACTCTGGCTTCACGTTTGCCTAGAGTGAAATAAGACAGTGATTTGACAGCCATATCATTCTTGGTTTCACCCCACTTGGGTGAAGTCAAAGGCAGGCTAATTCAAAACACACTGATTCTCAATGGTAAAATTATATGGAGGACACTAGCAATGGAAGTATTTTAGAGCATTCCAGTTACAATCTGTGTAATAAGGGACTAAAACCTCTAAGATTCTGTTTTCTGAAAGAGGGGAGAGCCCATCTGGTTTGCACAGCATCATCTCAGGAAAAAAGTATTGGAAAATGAGAGCAGCTATGATGGACAGCGGCAGGCAGTGGGCAGTTCAGGCCTAATACACGCCTCCTCAGCTGAAGCCAAAATCCTGTGACGTCCTCACCATCATGATCTCTATGGGAAGAGGCCAGTGTCTCTGTTGCTTTCAAACATGCTTCACCTAGGCAAGAGACACAACACCCAAACAAGTTCTAATGGCTTTTCAGCCATTGTCATCTGTTTTCCTTGAGTATCAGTCCTTGGATATTGTTAGATGGCGGCAgtattttattaatctgttcATCATTCAGCATTTTATGGGCAGTACatctgtgcttttgtgtgttgCTTCAGTGTTTGTTTACAACGTTTACCTTGAAGACAGTGTTTTCTTAACCAGCAAGTCATTTTGTCTGATTTCCTTGTTCTTCTATCAGAAGTGCCCAAGTCACTCCTGTAGTTTAACACTGCTGGCTCTAATGCTGACATGTATTAGGTGTATCAATTTAGTACAACTGGCTCTGATATGCAGATGGTCTTGAAGAGCCTGTTTAGGTCGATCATGTGGGCTAAAGCTGAAAATAACCTGTGGGAAAGTAGATCACAGGGAGCATACTGGGCCTCATTCTTCTTTATATAGTGTTCTTTAAGCTGTTGTCTGGATTCCACTTGTGACAAAAGATGTTGAGCATTTTATAATGTTATCTGTTGTAATTTATGTTTCTGTCATATGAAATCTTGAAGATATGTTTACAATGTGTCTCAATAGGTCTGTATATTAAATTAAGAAGTTAGTTAATAGACCAGAAACTTCAGTAAGCCATCACAGACTGTACCTATGGAGGCAACAAAGCACTGTATCAGTAAGCAGTAGGTTATATGCTCTTTTTCAGGAATACACTGTTATATGTAGAGACGTTTGTGACACAAAACCCAGAGAACTGCCTTGACTTTACATTATGCGCCTCTAATACCTTTCGTTAggataatgtataatgtaagcACACTAAATTGTGTATCAGTGTACCTATTTCTTACCTAGCCACTTTACTCCTGTTTGTGAATATGGCCTgttcattttgtccttttttaagTGCCATACACtgtatgtaacatgtatgtaCTATTTCACAACTCTGTATGTCAAGTATTTTATCTCATTTAATTTTGAATCTCTGGCTACTAGAGACTATTAATATAAAGTGgctgtgtctgtctgttgtCTACAGTTGGATATACAAAGACTTTTAGTATATAACAAATACACTGACCATGTCACAATCATTTCAACAAAAGTGCTTGTCTTTAGTTTTTGTGAAATGAAAACAACAAGACAAATACATCCAGCTACCGGAAATCACATTAGTGCAAAGTGAATGTCTTGAAGGTAGTAATAGCCTCACAGTGGAAACATGGCCCATGTCTCAGTAAGCACATTATGAGTGCAATATCCATTAGATGCTGCATAGTGCTGGTCCTGTATTAGAGATAGAGAGGTTCTGCTGTATCGAGTCTCCATGGTAGACTGCAGACTGTGACTGACTGTAGGGTAAAGCTTAAGCCAGAgctgtagaggttttattatAGACAATTACTATGATGGTAAAATTATTTGCAAAActaatcataataaaaaaaaggttacagCTTCA

Function

GO:

id name namespace
GO:0007420 brain development biological_process

KEGG:

id description
K22529 AMIGO; amphoterin-induced protein

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU155063 lncRNA upstream 161640 12228214 ~ 12228615 (+) False kcnq2a
TU155070 lncRNA upstream 163893 12226152 ~ 12226362 (+) True G131282
TU155067 lncRNA upstream 173041 12217004 ~ 12217214 (+) True G131279
TU154976 lncRNA upstream 395455 11994414 ~ 11994800 (+) False foxp3a
TU154975 lncRNA upstream 397216 11992819 ~ 11993039 (+) False foxp3a
XR_004578623.1 lncRNA downstream 123234 12519894 ~ 12533258 (+) True LOC117597859
XR_004578624.1 lncRNA downstream 123234 12519894 ~ 12533258 (+) False LOC117597859
TU155155 lncRNA downstream 206857 12603517 ~ 12604634 (+) False rbm15
TU155458 lncRNA downstream 293507 12690167 ~ 12712485 (+) True G131606
XR_004578634.1 lncRNA downstream 304052 12700712 ~ 12701501 (+) True LOC117597872
XM_034306268.1 mRNA upstream 67379 12314904 ~ 12322876 (+) False gnat2
XM_026926736.2 mRNA upstream 67379 12315193 ~ 12322876 (+) True gnat2
XM_026926743.2 mRNA upstream 67379 12317415 ~ 12322876 (+) False gnat2
XM_026916796.2 mRNA upstream 116191 12257576 ~ 12274064 (+) True eps8l3b
XM_026928081.2 mRNA upstream 132996 12249509 ~ 12257259 (+) True atp5pb
XM_026915908.2 mRNA downstream 17534 12414194 ~ 12433146 (+) True sort1b
XM_026926678.2 mRNA downstream 41452 12438112 ~ 12447984 (+) False nfyal
XM_026926693.2 mRNA downstream 41452 12438112 ~ 12447984 (+) False nfyal
XM_026926644.2 mRNA downstream 41452 12438112 ~ 12446707 (+) False nfyal
XM_026926686.2 mRNA downstream 41452 12438112 ~ 12446707 (+) False nfyal
trnad-guc_1 other upstream 8185 12381999 ~ 12382070 (+) True trnad-guc_1
TU154763 other upstream 679710 11709454 ~ 11710545 (+) False porcn
TU154756 other upstream 680823 11705655 ~ 11709432 (+) False porcn
TU154757 other upstream 680823 11705655 ~ 11709432 (+) False porcn
TU154760 other upstream 682294 11705655 ~ 11707961 (+) False porcn
trnav-cac_9 other downstream 665276 13061936 ~ 13062008 (+) True trnav-cac_9
trnaf-gaa_25 other downstream 667390 13064050 ~ 13064122 (+) True trnaf-gaa_25
trnae-cuc_18 other downstream 972888 13369548 ~ 13369619 (+) True trnae-cuc_18
TU156117 other downstream 1308596 13705256 ~ 13707550 (+) False LOC113527348
TU156645 other downstream 1925512 14322172 ~ 14323450 (+) True G132595

Expression Profile