RNA id: XR_003403395.2


Basic Information

Item Value
RNA id XR_003403395.2
length 2890
lncRNA type inter_gene
GC content 0.39
exon number 4
gene id LOC113533142
representative True

Chromosome Information

Item Value
chromosome id NC_047602.1
NCBI id CM018548.1
chromosome length 30442583
location 17699403 ~ 17714824 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

CGCGTACCCAAGCTTTTCCCAAGTGAAGATGGCATGACCGCAGTCATTTTGCGTAGTCATTAACAGCGGAATGCAAAAAATACGCCATCAGAACAgcattcttttttccctaataaaAACGGCAGATGAACCAATCTACACGTGAATCCGGAATGTCTGACAGAACTCTCCGCTTGAAAGATGCGCTAATGCCGcgctctcgctttctgtcatgcTCTCCTGAGGAGTAAGATGCAAAATGAAGCATGTGGGGTCGAAACAAACTACTTTGACATTCAGTAAAAGAATCTATGAAGATTTTAAATATTCGAACTAGAGGAATTCCCACCCTAGAGCAAAGATACAGTCTCTTCTAAGCACAATTGAGCAGTGGTGGCCGGAATCACTCAACTGTTTCAGAAATCGAAGGACATGGATGTGGAACAAAAATAAGCAagcTTTCCCATTACATTTTGTGGCTGTATAGCTGCCATTTTTCCACCTGAGGGAAAACTGAATTGCCACATGATGATAAGTAGCAccaatttataataattaaccATTGGTAGATGGCACAATTCTGAATTTTTACGGTGTCCTACATAGGCTGCTTCTAAAAGCTGAAAATGCTGCTTTCAAATTCAAAGCAGGATGAAAATTTATCACAAACTGTTCTGAGAACAGATACATTAGGAGGCCtacatacaaaaatacactTAGCGCCATGAACTTATTAGGCGGCAAGGCACCAGGTCAGCTTAGCTTTCGGATGTAACCATATACAAAGATGATGATCCGTGTTTGAATTTTAGGAAAGGAAGCTTAGCTTTAATTTACTGCActacagtttattttttcttttcattcagttgtgcaaaaaaaagtagATTGAAAAGTGAAATTCTAATTGTCAGTGACCATTGACAAATGGGTGTTGCTCCATAGATTTTTGAAGGAATATTCTCGGTTCAAACAAGATAAGCTCAATGAACAGCATTTGTGGCTGTTGTTTGTTGATTACCACAAGCACTAATTTTGACATGTCCCTCCTTTTCTTTGAACAATGCAAAAATCTGAGTTACAGTGAGGCACTTACAATGGAAGTGAATAGGGCCAATCTGtaaacgttaaaaaaaatactgtttcaaAACTACAAGACATAAACAATATTTGTTAACATGATTTAGTGTGATAAAATCACTTACTACCCTTGACAATAATGTCATCAAACCCTATAAACCGATAAACCTTCTTTTTGTGATGAACATTCATCTTGGTGTGAATAGACCTTAAGGCTGTCAGACCCCAATATCCTGATTAAAATAGAACAACCTGAATGTGAGTAAATGACAGTCTTTATTTTTGGGTAAAATatgctttaaataattaatgacaacTGCTCAAAAAGTTTTAGGAACCTCATCTTTCCTGATTTTTCTCCTTCAGAATCAGACATCTTTAGTGAGGATGAACTACCACTCACAACTCGCGAACAACTAAAATAACCACCCAGACAGTCGCCACCTACAGACCTGCCGACCAGAGAGTCAACACCCCAGGACCTGCCCAGAGAGTCTCTGCCACAGGACCAGCCAACACCAGACCTGCTGCACAGACAGTCATCACCATACCTGCCCAGAGAGTCACTGCCACTGGACCTGATGGCCAGAGAATCGCCACCACCGATTATGCTATACTCATCAAACTCTTAACTCTTCTGTAGGAAGTGAAGGAGAGCCAGCAAGTGCACAGCAATATACTGAATTCTTTGCTCAAGCAGCAGAGGTTCCTTAAGGAGCTGTCTTCCATCAATAGAAGATGTGGAAGCTATGAATGAAAACTGCATGCCCCAGGATTAATGCCCAGTGTTGTAAGTTAAAATTTATAATTCATGTTGCTTATGCCATGTTCATCAAATTATTCTGCAGGTGAACTGATTTCATCAAATTATGCTCCAGGTGAACTGATTTATGCATGTCATCTACGaatcattctgtgtgtgtttgtacttaGCTTGCAATGGTTGCAGATGTTGGTGGTTCTTCATTAGATGATGCTACAAGAAAGATGATAAGATGCCTGATTTCCAACGAAGTGGTGATCCAGTACAATCTGTTTGGTCATCATGGCAAGAAGAGATTTAGAGATTTGCGTCTTTTCGAGGTCATATATGATAAATGAGTTTTAATATTGCACTACTATGCTTAAAGACAGGCAGCAAAAGAGGCAGTTTTTCTGCGATGAAATCATTTTCGTTGTGTATAGTCTGAACTTCTATAGGGAAAAAATAAGTTGGGTCTTCAAATTATGAGGGTCAGTAAATGAAAGAGTGTTCATTTTGGGGTGAGCTAGCTATTCCTTTAAGTATAAGGGCCATTTCACATCACAAGCTTCAGCCATACATGACAGAGCGTATTTTTTGGCATCCATGTTAATGGGTTAGAGCATTCACACCAGACGCATGGGTGCAGTGGGTGTTTTGGTTCAGCGTCTATTTTTGCAGTGCTGCTCATGCTCAGCTAAAGTGACAGTGCAGATCTAAAATGACAAACAGATTTGTAAGTCTTTGCTTTTACAGGTGGACTGAAGAGGATTTATTAACAAAAGATATGAACCAGAAAGACACTGATCATCATTTCTGATCATCAACTTGTATTGTATTGCACTGTGCGTGAAGAATTTGACTTAACTattgaagcattttttttttagtgttttgtaAGTTTATAAGTCACATTACCTGCATTACCAGTTGTTGGGATAGTATTACCCTGCTGTCTTGGTGTGGTTCACTTTGCATAGAAGATCATCAGACGTTTGTATTTGATGAGTTCTCAGtgaattttacttattttttaaggaaatgttttattaaaatgttaaagttgacattcaaaaaaaaaaaaattac

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU158861 lncRNA upstream 88348 17610853 ~ 17611055 (+) True G134466
TU158788 lncRNA upstream 301031 17386264 ~ 17398372 (+) False LOC117597787
XR_004578546.1 lncRNA upstream 308675 17386300 ~ 17390728 (+) True LOC117597787
XR_004578638.1 lncRNA upstream 321167 17376303 ~ 17378236 (+) True LOC117597877
TU158714 lncRNA upstream 343743 17298168 ~ 17355660 (+) True G134344
TU158921 lncRNA downstream 21563 17736387 ~ 17736771 (+) True G134516
TU158926 lncRNA downstream 24126 17738950 ~ 17739247 (+) True G134521
XR_004578603.1 lncRNA downstream 142302 17857126 ~ 17861186 (+) True LOC117597839
TU158942 lncRNA downstream 155047 17869871 ~ 17870330 (+) True G134536
TU158946 lncRNA downstream 161550 17876374 ~ 17876727 (+) True G134540
XM_026925239.2 mRNA upstream 77757 17611386 ~ 17621646 (+) True lhx2b
XM_026925238.2 mRNA upstream 250341 17411108 ~ 17449062 (+) False crb2b
XM_026925237.2 mRNA upstream 250341 17411109 ~ 17449062 (+) True crb2b
XM_026925931.2 mRNA upstream 346813 17349316 ~ 17352590 (+) True seta
XM_034306703.1 mRNA upstream 617453 17061058 ~ 17081950 (+) True LOC117597835
XM_026925790.2 mRNA downstream 190980 17905804 ~ 17916639 (+) True enkd1
XM_026925789.2 mRNA downstream 190982 17905806 ~ 17916639 (+) False enkd1
XM_026925792.2 mRNA downstream 213600 17928424 ~ 17939695 (+) False polb
XM_026925793.2 mRNA downstream 213997 17928821 ~ 17939695 (+) True polb
XM_026925794.2 mRNA downstream 316151 18030975 ~ 18048321 (+) False vdac3
TU158711 other upstream 402520 17296111 ~ 17296883 (+) True G134341
XR_003402556.2 other upstream 964068 16716133 ~ 16735335 (+) False bicdl1
TU158261 other upstream 1098818 16580453 ~ 16600585 (+) False mtmr3
TU158254 other upstream 1105000 16580453 ~ 16594403 (+) False mtmr3
XR_003403426.2 other downstream 316151 18030975 ~ 18048889 (+) True vdac3
TU159255 other downstream 721386 18436210 ~ 18461934 (+) False pbx3b
TU159806 other downstream 1772663 19487487 ~ 19502643 (+) True G135287
XR_004578531.1 other downstream 2507591 20222415 ~ 20442191 (+) True LOC113533440
XR_004578533.1 other downstream 2507591 20222415 ~ 20442191 (+) False LOC113533440

Expression Profile