RNA id: TU221202


Basic Information

Item Value
RNA id TU221202
length 294
lncRNA type inter_gene
GC content 0.57
exon number 2
gene id G186882
representative True

Chromosome Information

Item Value
chromosome id NC_047605.1
NCBI id CM018551.1
chromosome length 26640196
location 23826676 ~ 23827902 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

ctcctgtagctgaatgaacacaaatccccacagccacgctccaacatCTTGCATGCGTCCTGGTGAAGCCTGTGAATCAGTGTGTCCTGCTCAGACAGCTTGGCTTTCCCCGGGAGCTGCGGCTCACTGCGTCCCTCAGCCGTGTGCAGGGAGATCAGTGTGACCTCCTCAGAGCACTCGCTGCAAGCGCGAGCCGACATTATGAGCGCATACGGACGAGCTCGCGCTGCTCTGCGAAGCCCGTTTACAAGAAACATTCCGTCCCATGCAGGCAACTCGAACAGCTCTGTAAAC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU221186 lncRNA upstream 25714 23795730 ~ 23800962 (+) True G186868
TU221181 lncRNA upstream 34549 23791920 ~ 23792127 (+) True G186864
TU221123 lncRNA upstream 112305 23712033 ~ 23714371 (+) True G186814
TU221100 lncRNA upstream 150108 23669018 ~ 23676568 (+) True G186798
TU221099 lncRNA upstream 150108 23671984 ~ 23676568 (+) False G186798
TU221284 lncRNA downstream 325213 24153115 ~ 24203702 (+) True G186949
TU221288 lncRNA downstream 327878 24155780 ~ 24162236 (+) True G186951
TU221282 lncRNA downstream 328700 24156602 ~ 24203702 (+) False G186949
TU221283 lncRNA downstream 329220 24157122 ~ 24203702 (+) False G186949
TU221319 lncRNA downstream 333366 24161268 ~ 24186454 (+) True G186976
XM_026912961.2 mRNA upstream 353107 23413029 ~ 23473569 (+) True LOC113526144
XM_026912969.2 mRNA upstream 353107 23413029 ~ 23473569 (+) False LOC113526144
XM_034308532.1 mRNA upstream 353107 23413029 ~ 23473569 (+) False LOC113526144
XM_034308530.1 mRNA upstream 359475 23413029 ~ 23467201 (+) False LOC113526144
XM_034308531.1 mRNA upstream 376028 23413029 ~ 23450648 (+) False LOC113526144
XM_034308759.1 mRNA downstream 7801 23835703 ~ 23926144 (+) True dennd1b
XM_026917310.2 mRNA downstream 150971 23978873 ~ 24003792 (+) True aspm
XM_026917314.2 mRNA downstream 150971 23978873 ~ 24003792 (+) False aspm
XM_026913018.2 mRNA downstream 289916 24117818 ~ 24138641 (+) True b3galt2
XM_026912863.2 mRNA downstream 289916 24117818 ~ 24138641 (+) False b3galt2
trnap-agg_1 other upstream 1867717 21958888 ~ 21958959 (+) True trnap-agg_1
XR_004579103.1 other upstream 2616137 21189786 ~ 21210539 (+) False wipf2a
TU218923 other upstream 3675782 20149971 ~ 20150894 (+) True G184979
XR_003403385.2 other upstream 3955213 19865798 ~ 19871463 (+) True ccl44
XR_004579107.1 other upstream 3992262 19827986 ~ 19834414 (+) False tax1bp3
trnaq-uug_2 other downstream 104964 23932866 ~ 23932937 (+) True trnaq-uug_2
trnaq-cug_11 other downstream 106230 23934132 ~ 23934203 (+) True trnaq-cug_11
trnaq-uug_3 other downstream 106733 23934635 ~ 23934706 (+) True trnaq-uug_3
trnaq-uug_4 other downstream 109115 23937017 ~ 23937088 (+) True trnaq-uug_4
trnaq-cug_12 other downstream 110407 23938309 ~ 23938380 (+) True trnaq-cug_12

Expression Profile