Gene
RNA
| Item | Value |
|---|---|
| RNA id | XR_004579107.1 |
| length | 1004 |
| RNA type | misc_RNA |
| GC content | 0.39 |
| exon number | 5 |
| gene id | tax1bp3 |
| representative | False |
| Item | Value |
|---|---|
| chromosome id | NC_047605.1 |
| NCBI id | CM018551.1 |
| chromosome length | 26640196 |
| location | 19827986 ~ 19834414 (+) |
| genome version | GENO_Phyp_1.0_2019_striped_catfish_Genome |
| species | striped catfish (Pangasianodon hypophthalmus) |
| id | name | namespace |
|---|---|---|
| GO:0030111 | regulation of Wnt signaling pathway | biological_process |
| GO:0060028 | convergent extension involved in axis elongation | biological_process |
| RNA id | RNA type | direction | distance | location | representative | gene id |
|---|---|---|---|---|---|---|
| TU218741 | lncRNA | upstream | 18732 | 19808713 ~ 19809254 (+) | True | G184823 |
| TU218615 | lncRNA | upstream | 123736 | 19703635 ~ 19704250 (+) | True | G184718 |
| TU218499 | lncRNA | upstream | 163495 | 19661092 ~ 19664491 (+) | True | G184617 |
| TU218491 | lncRNA | upstream | 225347 | 19548663 ~ 19602639 (+) | True | G184614 |
| TU218481 | lncRNA | upstream | 273168 | 19553977 ~ 19554818 (+) | False | si:ch73-40i7.5 |
| TU218759 | lncRNA | downstream | 9633 | 19844047 ~ 19844800 (+) | False | LOC113534304 |
| TU218810 | lncRNA | downstream | 87057 | 19921471 ~ 19947483 (+) | True | G184882 |
| TU218828 | lncRNA | downstream | 120180 | 19954594 ~ 19955040 (+) | True | G184900 |
| TU218933 | lncRNA | downstream | 430522 | 20264936 ~ 20265620 (+) | True | G184988 |
| TU218932 | lncRNA | downstream | 431294 | 20265708 ~ 20320904 (+) | True | G184987 |
| XM_026922981.2 | mRNA | upstream | 19628 | 19799656 ~ 19808358 (+) | False | nr2f6b |
| XM_026922974.2 | mRNA | upstream | 19628 | 19799658 ~ 19808358 (+) | True | nr2f6b |
| XM_034308741.1 | mRNA | upstream | 31818 | 19781228 ~ 19796168 (+) | False | ushbp1 |
| XM_026918792.2 | mRNA | upstream | 31818 | 19783734 ~ 19796168 (+) | True | ushbp1 |
| XM_034308633.1 | mRNA | upstream | 63935 | 19746882 ~ 19764051 (+) | False | gtpbp3 |
| XM_026927006.2 | mRNA | downstream | 1731 | 19836145 ~ 19845238 (+) | True | LOC113534304 |
| XM_034308398.1 | mRNA | downstream | 1731 | 19836145 ~ 19845238 (+) | False | LOC113534304 |
| XM_026926998.2 | mRNA | downstream | 1731 | 19836145 ~ 19845238 (+) | False | LOC113534304 |
| XM_034308399.1 | mRNA | downstream | 1731 | 19836145 ~ 19839327 (+) | False | LOC113534304 |
| XM_026925573.2 | mRNA | downstream | 20271 | 19854685 ~ 19860286 (+) | True | pole4 |
| TU218602 | other | upstream | 127712 | 19695244 ~ 19700274 (+) | True | rps15 |
| TU218488 | other | upstream | 274464 | 19532081 ~ 19553522 (+) | False | si:ch73-40i7.5 |
| TU218486 | other | upstream | 274464 | 19550382 ~ 19553522 (+) | False | si:ch73-40i7.5 |
| TU218227 | other | upstream | 558764 | 19254957 ~ 19269222 (+) | False | adgrl4 |
| TU217312 | other | upstream | 2031367 | 17795445 ~ 17796619 (+) | True | G183549 |
| XR_003403385.2 | other | downstream | 31384 | 19865798 ~ 19871463 (+) | True | ccl44 |
| TU218923 | other | downstream | 315557 | 20149971 ~ 20150894 (+) | True | G184979 |
| XR_004579103.1 | other | downstream | 1355372 | 21189786 ~ 21210539 (+) | False | wipf2a |
| trnap-agg_1 | other | downstream | 2124474 | 21958888 ~ 21958959 (+) | True | trnap-agg_1 |
| trnaq-uug_2 | other | downstream | 4098452 | 23932866 ~ 23932937 (+) | True | trnaq-uug_2 |
