RNA id: XR_004579054.1


Basic Information

Item Value
RNA id XR_004579054.1
length 262
lncRNA type inter_gene
GC content 0.40
exon number 4
gene id LOC117598393
representative True

Chromosome Information

Item Value
chromosome id NC_047605.1
NCBI id CM018551.1
chromosome length 26640196
location 26419606 ~ 26420373 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

gccggttcagcGGTTGTCcgtccttggaccacttttgGTGTTTTCAAAAGTTGTATTTCACTGATCTGATCAAGTGCTTCcaataaatgtgcaaacaaATCCAGATTACAAAACTTGTAAAAGAATAAACCAGGTAGACGGTGTCAATGAAGGTAAAATTCAGCAGCTCCATTTTGTGTtgaggggaaaataaaccatttcaggagtaaaaacacaggtttgatttaacacaccgatgttggagtgaagtaaacgtgtgtcc

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU222764 lncRNA upstream 196685 26218931 ~ 26222921 (+) True G188202
TU222766 lncRNA upstream 196685 26220435 ~ 26222921 (+) False G188202
TU222731 lncRNA upstream 252814 26153529 ~ 26166792 (+) True G188179
TU222738 lncRNA upstream 254850 26161314 ~ 26164756 (+) True G188184
TU222739 lncRNA upstream 254850 26162308 ~ 26164756 (+) False G188184
XR_004579058.1 lncRNA downstream 1 26420374 ~ 26421499 (+) True LOC117598395
TU223002 lncRNA downstream 6995 26427368 ~ 26575308 (+) False G188395
TU223004 lncRNA downstream 6995 26427368 ~ 26575866 (+) True G188395
XR_004579055.1 lncRNA downstream 8762 26429135 ~ 26436719 (+) True LOC117598394
XR_004579056.1 lncRNA downstream 8762 26429135 ~ 26436719 (+) False LOC117598394
XM_026910874.2 mRNA upstream 67571 26260530 ~ 26352035 (+) True syt7b
XM_026910875.2 mRNA upstream 67571 26260531 ~ 26352035 (+) False syt7b
XM_026910876.2 mRNA upstream 67571 26260532 ~ 26352035 (+) False syt7b
XM_026910877.2 mRNA upstream 67571 26260533 ~ 26352035 (+) False syt7b
XM_034308614.1 mRNA upstream 174886 26241072 ~ 26244720 (+) True LOC117598406
XM_034308579.1 mRNA downstream 1540 26421913 ~ 26429101 (+) True LOC113524564
XM_034308580.1 mRNA downstream 70744 26491117 ~ 26491773 (+) True LOC117598404
XM_026910145.2 mRNA downstream 94177 26514550 ~ 26517299 (+) True rplp2l
XM_034308820.1 mRNA downstream 143928 26564301 ~ 26566306 (+) True LOC117598415
TU222884 other upstream 101031 26260677 ~ 26318575 (+) False syt7b
TU222713 other upstream 207497 26185862 ~ 26212109 (+) False polr2l
TU222712 other upstream 207497 26210559 ~ 26212109 (+) False polr2l
TU222716 other upstream 209596 26206942 ~ 26210010 (+) True G188164
TU222375 other upstream 826103 25531745 ~ 25593503 (+) False LOC113523924

Expression Profile