RNA id: TU26463


Basic Information

Item Value
RNA id TU26463
length 208
lncRNA type inter_gene
GC content 0.44
exon number 1
gene id G22188
representative True

Chromosome Information

Item Value
chromosome id NC_047596.1
NCBI id CM018542.1
chromosome length 35203048
location 5657444 ~ 5657651 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

CGCTGACTTCCATTGATTGTCTTGTAAACAATTACTATTGtagaaatggaaatgaaatcCAACCTGTGCATTTTGGTGGATCACAAAGGCAAGTAACCCTCCACAAAGATGTCCTGTATCTGAAGGATCAGCTTGCCTTGTCCTTCTGCACAATCTCCCCCAATCCTGCAGCAATTTGGGCACACATAAACCCCGGTTTTCTGACATG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU26461 lncRNA downstream 5338 5651875 ~ 5652106 (-) True G22186
TU26422 lncRNA downstream 121437 5532037 ~ 5536007 (-) True romo1
TU26423 lncRNA downstream 182677 5474557 ~ 5474767 (-) True G22156
TU26253 lncRNA downstream 243378 5406935 ~ 5414066 (-) False LOC113533127
TU26201 lncRNA downstream 326306 5330826 ~ 5331138 (-) True G21975
TU26456 lncRNA upstream 22470 5680121 ~ 5680482 (-) True G22182
TU26478 lncRNA upstream 33036 5690687 ~ 5691117 (-) True G22203
TU26476 lncRNA upstream 43966 5701617 ~ 5702754 (-) True G22201
TU26489 lncRNA upstream 53359 5711010 ~ 5711238 (-) True G22214
TU26494 lncRNA upstream 58189 5715840 ~ 5716050 (-) True G22219
XM_026917461.2 mRNA downstream 6159 5638596 ~ 5651285 (-) False osgn1
XM_026917446.2 mRNA downstream 6679 5638596 ~ 5650765 (-) True osgn1
XM_026917453.2 mRNA downstream 9675 5638596 ~ 5647769 (-) False osgn1
XM_026924211.2 mRNA downstream 26187 5594109 ~ 5631257 (-) True mtss1
XM_026924219.2 mRNA downstream 26189 5594109 ~ 5631255 (-) False mtss1
XM_026918763.2 mRNA upstream 2152 5659803 ~ 5679959 (-) True pigu
XM_026919444.2 mRNA upstream 104086 5761737 ~ 5863433 (-) False chd6
XM_026919428.2 mRNA upstream 104086 5761737 ~ 5863433 (-) True chd6
XM_026919418.2 mRNA upstream 104086 5761737 ~ 5863433 (-) False chd6
XM_034298801.1 mRNA upstream 104086 5761737 ~ 5863433 (-) False chd6
TU26421 other downstream 121384 5534124 ~ 5536060 (-) False romo1
TU26420 other downstream 121437 5534124 ~ 5536007 (-) False romo1
XR_003403149.2 other downstream 456232 5111462 ~ 5201212 (-) False LOC113530384
XR_004577391.1 other upstream 416384 6074035 ~ 6076877 (-) False LOC117596222
TU26888 other upstream 821751 6479402 ~ 6480011 (-) True G22591
XR_004580309.1 other upstream 2604968 8262619 ~ 8265229 (-) False mitfa
TU28034 other upstream 2823400 8481051 ~ 8484029 (-) False tcta
TU28035 other upstream 2823400 8481051 ~ 8484181 (-) False tcta

Expression Profile