RNA id: XM_026921794.2


Basic Information

Item Value
RNA id XM_026921794.2
length 2011
RNA type mRNA
GC content 0.46
exon number 12
gene id camk1a
representative True

Chromosome Information

Item Value
chromosome id NC_047596.1
NCBI id CM018542.1
chromosome length 35203048
location 12223244 ~ 12244251 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

GCTGAATTTAGGATCCCTGCAGCGGCGCGTGTGACGTCAGAGCAGGTCTGGCTGAGCAGCGCGAGCGCGACATCAGCGCAAAAGACTGCAAAGCATTCAGCTCCGAGAGCAGGCGAACAGCTTCCCAGTGGAGCATCAGCCCGACTGTACAATGCCCTTAGAGGAAGGAAAAGGATGGAAAAAGAAGACAACTGACATCAAGGAAAATTATGACTTCAAAGAAGTTCTGGGGACGGGGGCGTTCTCTGAGGTGGTGCTGGCTGAGGAGAAGAGCACTCAGCGCCTCGTTGCTGTCAAGTGCATCCCCAAGAAGGCACTGGAGGGCAAAGAGAACAGTATCGAGAACGAGATAGTTGTGCTACACAGGATAAAACATAAGAACATTGTTTCACTGGAGGACATATTTGAGAGTCAGACACACCTGTACCTGGTCATGCAATTGGTATCTGGTGGAGAGCTGTTTGACAGAATTGTTGAGAAGGGTttctacacagagagagatgccAGTAAACTCATTCATCAGATCTTAGATGCAGTGAAATATCTGCATGATGTGGGCATTGTGCACAGAGATTTAAAGCCAGAGAACCTTCTGTATTATAGCATGGATGAAGACTCCAACATCATGATCAGTGACTTTGGACTGTCAAAAATTGAGGACTCTGGAACTGTGATGTCAACCGCCTGTGGAACGCCTGGATATGTGGCTCCTGAGGTTCTGGCTCAGAAACCCTACAGCAAAGCAGTGGACTGCTGGTCCATAGGGGTTATTTCTTACATTTTGTTATGTGGATATCCACCAttttatgatgaaaatgatgccAAGCTGTTTGAGCAAATCCTCAAGGCTGAGTATGAGTTTGATTCTCCATATTGGGATGATATATCAGACTCAGCTAAAGATTTCATATGCCACCTAATGGAGAAAGATCCAGAGCTAAGATATACTTGTGAACAAGCCTTACAGCACCCATGGATCTCGGGAGACACTGCTCTTGACAAGAACATCCATGAGTCTGTCAGCGCTCAAATTAAAAAGAACTTTGCCAAGAGTAAAtggaagCAAGCCTTCAATGCGACAGCCGTGGTGAGGCACATGAGGAGGTTACAGCTGGGCACCAGCCTGGAGGGCTCCAGTCAAATCACCACCACCAGCCCCTGCCACAGACATCTGCTCCTGCCTGCTAAAGAGCACCACCCGGAAGAAGATGAGGACACTGAAGAGGAGGAGAACGGTTCTCCAGATATTGATGGGCGACGCAACAGTGCTGATCAGGACAGCGTCAGAAGCTGTGCATACTGCTGTAGACCAACCAGCAGGGTCTGAAACGGACCGACTAGCATGCAGAACCTAGAGAAGGCCAGCAGATCCCATTACACATATATGCCAATCACCACCAGTCTGGTACTGAACACAGAGCTTAATTAAAAGTGTCCACCAGAGGGAGCTAGTGCAACAAGAAAGACAGCAAGACAGGCTTGGGGAGGACTGAACATGCCAACCCAATCGTTCCTTTAACTGTGGTTCATTTATAACACCCACTTTAGgttttgtctgttttatattttgtatccCAACCAAAGAAAAATCATAATTGTGTTCTACTGAGACTGGAAAGATTATTCTCCAGGTATATTCTCTGAAAGCAGTTTAAGATGCTTTGgtatgaaatatattatttatggaTTTAAATGTTGTAGTCTGCTTTGTTAGTTTTGGCACCGAAAACAGAGATTATGAAATTCTGATGCCTCATCATATTAGGCTTCACTTGAAAATGTCCTGCCTTAATCCATGGTGTATTTATTTGCTGAATGGTTTGTGCACTGTTCACATCTCTGACCCTGCATTCTGTGTCAGACTGGTTTAACACCGGCCGGTGATTCACAGCTTTAAGCTAGTGCTCCCTCATGCGTACATGGGTCTAGGTTTTCcttaggctgctttcacactaggCATTTTTCCCAAATCACCACACGCCATGGCAGAATGACACACCTTGTAAAAAAA

Function

GO: NA

KEGG:

id description
K08794 CAMK1; calcium/calmodulin-dependent protein kinase I

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU30538 lncRNA downstream 8442 12213764 ~ 12214802 (-) False LOC117596184
XR_004577361.1 lncRNA downstream 8473 12212988 ~ 12214771 (-) True LOC117596184
TU30403 lncRNA downstream 285441 11937615 ~ 11937803 (-) True G25723
TU30232 lncRNA downstream 450954 11752487 ~ 11772290 (-) False G25575
TU30231 lncRNA downstream 469564 11752487 ~ 11753680 (-) True G25575
TU30798 lncRNA upstream 20441 12264692 ~ 12269812 (-) True G26077
TU30803 lncRNA upstream 25623 12269874 ~ 12270255 (-) True G26082
TU30806 lncRNA upstream 30984 12275235 ~ 12276054 (-) True G26085
TU30844 lncRNA upstream 230896 12475147 ~ 12485954 (-) True G26117
TU30851 lncRNA upstream 257447 12501698 ~ 12502087 (-) True G26124
XM_026918597.2 mRNA downstream 97585 12043629 ~ 12125659 (-) True ca16b
XM_026918600.2 mRNA downstream 97586 12043629 ~ 12125658 (-) False ca16b
XM_034313231.1 mRNA downstream 181946 12035632 ~ 12041298 (-) False tardbp
XM_034313227.1 mRNA downstream 182609 12035632 ~ 12040635 (-) False tardbp
XM_034313237.1 mRNA downstream 182823 12035632 ~ 12040421 (-) True tardbp
XM_026922590.2 mRNA upstream 32367 12276618 ~ 12303048 (-) True kcnb1
XM_026926191.2 mRNA upstream 61198 12305449 ~ 12356720 (-) True ptgis
XM_026926185.2 mRNA upstream 61198 12305449 ~ 12314745 (-) False ptgis
XM_026918407.2 mRNA upstream 187959 12432210 ~ 12438064 (-) True tarbp2
XM_026918415.2 mRNA upstream 188939 12433190 ~ 12438065 (-) False tarbp2
TU29342 other downstream 1732949 10489293 ~ 10490295 (-) True G24760
TU29080 other downstream 2354966 9863367 ~ 9868278 (-) False G24516
TU28828 other downstream 2504274 9715527 ~ 9718970 (-) False tnnt2b
TU28673 other downstream 2781434 9435563 ~ 9441810 (-) False tusc2a
TU28036 other downstream 3739130 8481051 ~ 8484114 (-) False tcta
XR_003403751.2 other upstream 994453 13238704 ~ 13238806 (-) True LOC113537313
TU31648 other upstream 1254354 13498605 ~ 13499984 (-) False slc5a8l
TU31814 other upstream 1388011 13632262 ~ 13634652 (-) False rps26l
XR_004579719.1 other upstream 1629463 13873714 ~ 13907189 (-) False lhfpl4a
TU31994 other upstream 1806150 14050401 ~ 14058445 (-) True G27107

Expression Profile