RNA id: XM_026918597.2


Basic Information

Item Value
RNA id XM_026918597.2
length 4998
RNA type mRNA
GC content 0.48
exon number 30
gene id ca16b
representative True

Chromosome Information

Item Value
chromosome id NC_047596.1
NCBI id CM018542.1
chromosome length 35203048
location 12043629 ~ 12125659 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

CCTAGGGCGCTAGGATCCAGAGGGGGAGGACTCTGCTTTGCCTTCCCGCCTCGCTGATGTTGAAggaaaaagagagcgagagagaaagagagagagagagagagagagagagagagatttgtgcTGGTGCGCTCGAGTTCCCAACTTCGTGCAGGAAGCAGCGCGAGCGCGCTTAACGCAGAGCGCGAGCTGTGCGGGGGAGAAACGGAAGACACGAGCGATTTAAAGTGCGGGATTAATCTCGgaaatgtgaagtgtgtgttctgatcaCGGGATGCGCGATATGTCCCACAACATTACTACTTGCTTAGCGTTTGCAGCCCTAAACTGCTCTTCTGTGCAGACCCTGCATTAGACGCGCTTGGCGGTGAAACACGGCGTTTCCTCAGAACTGACTGTCAGTTTCGTTGGTTGTTCGGCCTCTTGGTCAGAGTGACATGAGTGTGAGAAACCCGCACCGTTCCACACTCTTGTGTTGGGGTCTGTCTGTGCTCCTCATGCAGTCCATCAGCTCGCATCCCGCTGCACCACCAAGAACGAAACATGGAAGAATGTCAaatcagagagagaagagagcggCAGGAGAACCCTACTGGGCATATTCGGGGATCCATGGGCCATGGAGATGGGCATCAATGTACCCTGAGTGTGGGGAAAGAAACCAGTCACCTGTCAACATCCCAGATGAAGATGCACTGGTTTCTCAGGAGTACCAGGAGCTCACCCTGGAGGGCTTTGCAGTCAAGTCATCTAACAAAACCTCCATGAAGAACACAGGCAAAACAGtCTCCATTCTTTTGAAGAATGACTACTTTGTGAGAGGAGCAGGTCTACCTGGGCGGTTCAAGGCAGAGAAAGTGGAGTTTCACTGGGGCCACAGCAATGGATCAGCCGGCTCAGAGCACAGCATTAATGGAAAGCGGTTTCCAGTTGAGATGCAGATTTTCTTCTATAATTCAGATGACTTTGACAGTCTCAACACTGCAATAAAGGAGAGGAGAATCATCGCTGCCATGGCTATCTTCTTCCAGGTGGGAAAGAAGAACAATGTGGCTGCTGAGCCCATCATCTCTGGTCTCAAACGGGTTGTTCATCATGAGAAGGAGACGAATCTTGCACCTTTCGTCCTAAGGGACCTGCTACCGTCCTCTTTGGGGAGTTACTATCGTTACACTGGCTCCTTGACTACTCCTCCATGTAGTAAAGTTGTGGAATGGATCATCCTCAGTCGACCTGTTTACCTCTCCTACCATCagTTGGAAGCATTCTACTCTATCTTTACCACTGAGCAGCAGGATCATGTGAAGTCAGTGGAGTACCTCAGAAACAACTATCGGCCCACTCAAGATCTGCACAACCGACTTGTCTTCAAATCAGCAGTGAAGGATGCCTGGCTTCCAGACCCCATGACTGATGGGCATGGTAGCTCTACAGACACAGAGCCCTCCAGAGtCTGCAGCAGCATTCCTGACAACATGAAGGTCCGTCCTCTGAACCGAACAGCAATGGTGCTGACCTGGGATCGCCCTTCCACTATCTACCACCCACCTCTTGTGGGCTTCCTTGTCACCTACAGCTGGGTTAAGGATGACGTGACCATTGAGAAGATGTTTACCCAGAGCAGCGAGCACCACACTCGGGCAGTGATCACACACATGTCCCCAGATGCTCTGTATCTCTTTAGGGTGCAGGCCTTGTGCCAGAGAGACCAGCGCAGTGACTTTAGCCAAACACTTTTATTCAAAGCAAATACTACAAGGATATTTGAAGGGACAAGAATTATAAAAACTGGAATGCCCACTGTGTCTTCCTCTTCAGACATGGCACCTATTAGCTCTGGCTCCTCTACATGGTCATCTTCTGGTCTCCCTTTTTCCTTTGTGTCCATTGCAACAGGCATGGGACCTCCATCCAGTGGGGGGCAGACCACAATGGCATCTCTGGTCACCAGCACACTGCTGGCTGGCCTTGGCTTCAGTGGTGGTGTGATTTCCTCCCTCCCTGGATCCCTCTGGCCCACCCATTCTCCTAGCTCAGGTCCTGCACCAACACGACAACCAGCCTCTCCTACATTTGAGACCACCCAAAATGGGAACAATCCTCTCCCCTCAGAAGAGGGAGAAATAACTGACGAGTTGGATAAGGAAGAGCACAAACAAGAagaagatgaggaggatgatAATGAGGAAGATAGggtggaggaaaagaaaaagaaagaaaaaaatatgacagaaaacGAGAAGAAACAAGAGCAGGCCACATTTCAAGAACCAGCTTCTTCTGTTTCACCATCTAGAGAGAGAGGGCGAGAAGGCGGACTTGCAAATACTGGAGTCTCCATAGTAGTACCTATAGCCCCAGAGGAGAAAATCTATACTGTTACTCTAAGACCTTCAGGAGGCTTGAGCCAAACAACTTGGCTGCAAGAAAATTACACAACAGATATGCAGCTTGCCAGCAGCCCCACACAAGCCACAAAACTTACCAATAAAGAGAAAAGCAGCCAGCCTGTCTATATCCACACTGATCAGAACAGCATATCCACGGTGTCCAGGGATCCCGCATCCTCAGCAAACAGGATGGAATGGATTATCCCTTTAATGGTGGTATCGGCTCTTACGCTCCTCTGCTTAATCATCCTGCTAGCTGTCCTGGTCTACTGGAGGATGAATAGCATCTGCTCTTTGCTCTGCATTAGTTACAGGAAGTTTTTCCAGACTACTCATATGTACACAGAGGACAGAAACTCCCCTCAAGTGATTCACAATGAGAGCTTAACTGGATTCTTAATACCTGatgaTCGGGAAGCACTCTCAGTCAGACAGTTCATCAAACATGTAATGGAGCTCTATTCTAATAACCAACAGGGCTTCGCTCAAGAATTTAATGATATTCAGCATTCTGTGAGTGATATAGAGATAACAGCAGAGCACTCGAACCACCCAGACAACAAGCATAAAAACAGATACATCAACATAGTGGCCTATGATCATAGCAGAGTGAAGTTGCAACCGTTGGCAGGAAAAGATTCCAAACACACTGACTACATCAACGCAAACTATGTCAATGGTTGTAACAAACCAAGGGCATATATTGCTGCTCAGGGGCCACTGAAGTCTACCTTTGAAGACTTCTGGAGAATGATCTGGGAACAAAACATCAGTGTAATTGTCATGATCACCAATCTGGTGGAGCAGGGCAGAagaaAATGTGATCAGTACTGGCCCTCAGAGAACACTGAAGAGTATGGAAGTATAGTAGTGACACTGAAGAGCACTAAGATGCATGCTTGGTACACACTTCGCCACTTTCTCATACGCAACACCAGAGTAACAAAGAGTCAAAAGGGAAGACAGACTGAGAGATTAGTGGTTCAGTATCACTACACTCAGTGGCCAGACATGGGTGTGCCTGAGTACACACTACCAGTTCTCACATTCATCTCCAGATCGTCTGCAGCACGTGCTCCAAAATCTGGCCCTGTGCTAGTGCACTGCAGTGCTGGCGTTGGGAGGACAGGCACATATATTGTGATCGACAGCATGCTCCAGCAGATAAAGGATAAAGGAACGGTGAATGTCATGGGCTTTCTCAAACACATCCGCACCCAGCGCAATTACCTCGTCCAGACAGAGgAGCAGTATGTGTTCATCCATGATGCTCTGATGGAGGCAGTGCTCGGTAAAAATACTGAAGTTCCTGCCTGGAAGCTCCACAACTATGTAAACAGCATCCTCACCCCTAGTCCTTCTGGCACCACTCACATGGAGAAGCAGTTTAAGCTGGTGATGCAGTGTGACATCCAGAAGTGCTTCAGCGCCCAGAAAGACTGCAACAAAGAGAAGAACCGAAACTCCTCAGTGGTGCCGTCTGAGCAAGCCCGGGTCCCGCTTTCTCCTCTCCGTGGAATGAAGGGCACGGAGTACATCAATGCCTCTTACATTACGGGTTACTACAGAAGCAATGAGTTCATTATTACCCAGCATCCTTTGCCTCACACAACCATGGACTTCTGGAGGATGATCTGGGATCACAATGTTCAAGTCATCATCATGCTGCCAGATAATCTCAGTCTAACCGAAGACGAGTTTGTGTACTGGCCCAGCAGAGAAGAGCCCATGAACTGTGCAGCATTTACCGTAACCCTCATTAACACTGACAAACTGTGTCTGTGTAATGAAGAGCAGATCATCATCCATGACTTTATCCTCGAGGCCACACAAgatgACTATGTACTTGAAGTTCGCCATTTTCAGTGTCCAAACTGGCCTGATCTCACTGGTCCTGTTAGCAACACATTTGAgctcatcaacatcatcaaagAGGAGGCCATGACCAGAGATGGTCCTACTATTGTACATGATGAGTTTGGAGGTGTTTCTGCAGGGATGCTGTGTGCTCTCACCACCCTGTGTCAGCAGCTGGAGAGTGAGAGTGCTGTGGACGTCTACCAGGTGGCCAAGATGATCAATCTCATGCGTCCAGGGGTCTTCACAGACATCGAGCATTATCAGTATCTTTACAAAGCAATGCTCAGCCTGGTTGGTAGTACAGACAGTGGAATTTTCTCTTCCTGTATGGACAGACATGGGAGGATTCTGAATACGGATAAAGCCAATCCAGCGGAGAGCATGGAGTCTCTGGTGTGAAGGTTCCGGAAAACAAGAAGGGACGAGTTTGTTTGGCAGACTTTCCTTGAGGCCTTTATTTTTGCCAGACTCGctgataaagtaaaaaaaaaagtctaaagaCTTTTTGTATACTGAtgaaaaattcttttgatatttatttttgctgcttTTTGTTATCCTGCTGAGTGTCACAACTTATTCTTCAACACACCTACAAACAACAATGCAGCTGTCTACTTTGCACTATATTGTCAGTGTTACTGCCTGATGCCTAGATGATTTCCACCCACTCTGGCCATTGAGCTCGTTGTTTTATTGGAAGGACAATAAGCAGtgaaactggactgaaaacaACCGCAAGTCAGCA

Function

GO: NA

KEGG:

id description
K16667 PTPRG; receptor-type tyrosine-protein phosphatase gamma

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU30403 lncRNA downstream 105826 11937615 ~ 11937803 (-) True G25723
TU30232 lncRNA downstream 271339 11752487 ~ 11772290 (-) False G25575
TU30231 lncRNA downstream 289949 11752487 ~ 11753680 (-) True G25575
TU30226 lncRNA downstream 304888 11737567 ~ 11738741 (-) True G25570
TU30209 lncRNA downstream 345551 11697079 ~ 11698078 (-) True G25553
XR_004577361.1 lncRNA upstream 87329 12212988 ~ 12214771 (-) True LOC117596184
TU30538 lncRNA upstream 88105 12213764 ~ 12214802 (-) False LOC117596184
TU30798 lncRNA upstream 139033 12264692 ~ 12269812 (-) True G26077
TU30803 lncRNA upstream 144215 12269874 ~ 12270255 (-) True G26082
TU30806 lncRNA upstream 149576 12275235 ~ 12276054 (-) True G26085
XM_034313231.1 mRNA downstream 2331 12035632 ~ 12041298 (-) False tardbp
XM_034313227.1 mRNA downstream 2994 12035632 ~ 12040635 (-) False tardbp
XM_034313237.1 mRNA downstream 3208 12035632 ~ 12040421 (-) True tardbp
XM_034299710.1 mRNA downstream 14969 12026728 ~ 12028660 (-) True LOC117596078
XM_026915754.2 mRNA downstream 34810 11996963 ~ 12008819 (-) True epha2a
XM_026921794.2 mRNA upstream 97585 12223244 ~ 12244251 (-) True camk1a
XM_026922590.2 mRNA upstream 150959 12276618 ~ 12303048 (-) True kcnb1
XM_026926191.2 mRNA upstream 179790 12305449 ~ 12356720 (-) True ptgis
XM_026926185.2 mRNA upstream 179790 12305449 ~ 12314745 (-) False ptgis
XM_026918407.2 mRNA upstream 306551 12432210 ~ 12438064 (-) True tarbp2
TU29342 other downstream 1553334 10489293 ~ 10490295 (-) True G24760
TU29080 other downstream 2175351 9863367 ~ 9868278 (-) False G24516
TU28828 other downstream 2324659 9715527 ~ 9718970 (-) False tnnt2b
TU28673 other downstream 2601819 9435563 ~ 9441810 (-) False tusc2a
TU28036 other downstream 3559515 8481051 ~ 8484114 (-) False tcta
XR_003403751.2 other upstream 1113045 13238704 ~ 13238806 (-) True LOC113537313
TU31648 other upstream 1372946 13498605 ~ 13499984 (-) False slc5a8l
TU31814 other upstream 1506603 13632262 ~ 13634652 (-) False rps26l
XR_004579719.1 other upstream 1748055 13873714 ~ 13907189 (-) False lhfpl4a
TU31994 other upstream 1924742 14050401 ~ 14058445 (-) True G27107

Expression Profile