RNA id: XM_026920376.2


Basic Information

Item Value
RNA id XM_026920376.2
length 3203
RNA type mRNA
GC content 0.50
exon number 14
gene id si:ch73-290k24.5
representative True

Chromosome Information

Item Value
chromosome id NC_047610.1
NCBI id CM018556.1
chromosome length 25111544
location 21228320 ~ 21238999 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

CATCGCCTGGTcttgagctaaaaaaaaaaagaggtcagATACAAAGATGGGTAACGGAAGGATGTGTAAAAGGGTTGGGAGCCATTATAGCTGCAGCTGATGCGCTACGGTGCGTGTGTGAGGCGCAATGTGCGGGAGAGACACGCAGGGAAACTGAGCAAACAAGGATGTCGACTGCTGCGGAGCAGCCAAAGCATTGCCCTGACTGTGGAGAGCTGTGCGGTTTTGGGGATGTACTGAAGACCCACACATGCCAAATGATCTGTCTGACTCCAAGACGGAAATCTGAAGGGGCTGTGATGGCTCTTCCTGCCCAGACACAGAGCACTTCCTCCCTGGGGAACAGTGAGCTCAGCCAGCCCTTACATCTGGAGCTCCTGGATGCACTGAGCCTGGCTCCTTCAGCCACTGCTCCTCTGGCTCAGCTGCTTGTCCACCAGTGCACTCCCTCAGTCCTGTCCTCCACTGCCTCTCCCCCACTCTCTCCGTTCTCCAGGCCTGAGCGAGCACTAGCCCAGATGAGCACACCATGGCTAGCCAGGTTAGCCATGGAGGCTGGGCTCCAGCAGCTGACCCTGGAGGTTCAGGAGCATGTGTCCATGCGGCTGGGGTCCTTGCAGGAAGAGGTGAAGAGGAGGAGTGCGGAGGTGCACAGGGCTCatagagaaagtgagagaatggAGAAGGAAAAGCAGGAAGCCGAGGAAAAGGCGGCTGAGTTGGAGCGCCAGGTGGAGGTTTCTGTGGAGATGCTAGCAAGCCTGAGGCAGGAGCTGATGGAGCGGGAAGAGGAGCTCAGCCTCAAACAACAagaggTTTGTGATTTGGACAGGTTTGTCCAAGAGACCGCTCTGAGGGAAGCGAGCGCTAAGATTCGCCTGCAGAGCTTCATCGAGAATCTGTTGGAGAGAGCAGAAAGAGCAGAGCGACAGCTGCAGGAGCtgcacacaccctcacacacacacaccgacatcACATCACCTGATGGATCCTTCACAGCTGCCGGAGGAGCATTTCACCGGAGGAGCTACAGCGAATCAGGGATTTCCAGGTGTTGCTATTCACGATGTGATCACACAGGAAGTCCAGTTCGCAGGTCAGGGGTCTGTGAAGTGCTTCGTGAGCCACAGTGTTACCAGAGGAACCCTTCAGACACGGAGGCTGATTCAGACAGCTGGTCTGTCTATAGCACCGAGTCACAGGAGGGTCTGCAGCAGCATTATAGAACATACAACAAGAGAgATAACACCGCCTTCCACTGCCACCCCCTCCGTCATGGCAACAGGCCTGACCGATCAGTAATGTGTTCAAAGCGAATGAAGAGGAGGGCGTGGCTTTTCTGCGTCTTTCCTTACCTGGACACACACTCGCTCCTCATTGctgcacaggtgtGTAAGGATTGGTGGAGTGTTGCCCGTCACCCTGCAGTGTGGACCAGAGTAACACTAGAAAATAGCCGCATTTCATCAAAGtttatgtCAACTATGGCTCAGTGGTGTAGTCGGACACACACGCTCATTCTATGCCACCTAAAACCTCGCTCTCGTGCCAAGAAAGAGAGTAAAGAGGAGTATCTGAAGAACAcaagAGGGTGTCTGGAGGAGGGGCTGGAGGCAGTGCTAAGGTCAGCAGGGCGGAGTCTTGTGTCTTTGACCATCTCTCATTGCCCCAACATTTTGACGGACAGGACACTGTGGCTTGTCAGCTGCCACTGCAGAGCTCTGCAAAGACTTACTTACAGGAGCTCATCAGATCCTGTAGGTCAGGAGGTGATCTGGGCTTTAGGGGCAGGATGCAGAGACATCACCAGCCTGAACATCGCACCACTACAGCCATGCCAGCAGCCCAGTCGCTTTAGTAACCGCTGCTTGCAGACGATTGGCCGGTGTTGGCCTCACCTGTATCAGGTGGGAGTGGGCGGAGCTGGCTGTGGTCTTCAGGGATTAGCCTCTTTGGTGAGGAACTgctccggtgtgtgtgtgttggagttggACCACATGAGTGAGATGAGCCAACAGGGGGCAGCAGAGCTGTGCAGGGAAGGACTACAGcagttacacacactcatcttcaACTACACACCTGTTACTGCCAAAGCCATCCTGCACTTCCATAgtgtgtgtttgaagcTGAAGTGTATCATCGTGCTCATGAGTTCTGCTGATTACTTTGACGACCCTGAGAGTGAAGAAGCGAAGAGAATTTTTAGTGAGATGGTCAGCAGCCTGCAGGCACTGAAGAAGAGACCTGGCTTGTCAGACATCCTTCAGGTCAGAGTGGACCAGCGTGACATTCTACCTGACTCTTAAAGAAaccaaatatacacacacacacacacacacacacacaacatcctACCCACGGCCCAATTGTACCTAATGTAAAACTAGAACAATGAGAAACAGCATCAGGATTGggttatactgtaatgtttaatgtataacattaacacacacaacacacacacacacacacacacccatacacacacaaacttcctGCACATTTTTAGACCTTATTCTCCTTGCATAGATACACACCTACACCtgtatacacataaacacacacgtgcacacagatacacacctacacctgtagctttacaatttcacttcactggagctaagaggctcaaacatgttccatgtttgtttatattttaatgtctaACATTGTGGTAACGTtgtggtaacacacacacacacacacactgcacatttctAGTCCTTATTCTTCGCACACTGATACACTCCTACACCTctgcacacatacaaacacacaccaatacacacacaagtcaACATCTATTcacccacacatatacacaaaacataaacacacacaaaaacacacacacactgcactttatTTTCCACACTCGGATACACACCTATACCTATGCACTccccccctacacacacacacaaacatgctaaacatttttaaacgtTATTCTCCACACAAAGATACATACCTACACCTGTGCACCCAGACATAAGCatgaaaacacaaatacacacactgcacgtTTTAAGACTTTATTCTCCATGCATAGGTACATTCTTACAcctatgcgcacacacacacacacacttactgcacTTTTCTCCCCACACTCAGTTGCATTCATATacctatgcacacacacacacacacacacacacacacacacacatacaaacttactgcacttttttccccac

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU306028 lncRNA upstream 96297 21115050 ~ 21132053 (+) True G258459
TU306031 lncRNA upstream 120335 21107347 ~ 21108015 (+) True G258462
TU306054 lncRNA upstream 123249 21103714 ~ 21105101 (+) True G258483
TU306047 lncRNA upstream 134506 21093329 ~ 21093844 (+) True G258476
TU306029 lncRNA upstream 140128 21085382 ~ 21088222 (+) True G258460
TU306264 lncRNA downstream 115441 21354440 ~ 21354730 (+) True G258680
TU306276 lncRNA downstream 145292 21384291 ~ 21386101 (+) True G258689
TU306345 lncRNA downstream 240233 21479232 ~ 21496565 (+) True G258753
TU306351 lncRNA downstream 260979 21499978 ~ 21510994 (+) True G258758
TU306346 lncRNA downstream 312919 21551918 ~ 21556438 (+) False G258753
XM_026921203.2 mRNA upstream 607 21225341 ~ 21227743 (+) True egr4
XM_026921015.2 mRNA upstream 16086 21202490 ~ 21212264 (+) True LOC113530738
XM_026920595.2 mRNA upstream 56424 21143036 ~ 21171926 (+) True si:ch73-217b7.1
XM_026920081.2 mRNA downstream 3247 21242246 ~ 21257288 (+) True LOC113530257
XM_034312205.1 mRNA downstream 36431 21275430 ~ 21287608 (+) False LOC113530283
XM_026920122.2 mRNA downstream 36431 21275430 ~ 21287605 (+) True LOC113530283
XM_026920123.2 mRNA downstream 36431 21275430 ~ 21287605 (+) False LOC113530283
XM_034311890.1 mRNA downstream 71076 21310075 ~ 21312795 (+) True LOC117599257
XR_004579743.1 other upstream 321100 20903105 ~ 20907250 (+) False ubxn10
TU305940 other upstream 323277 20903147 ~ 20905073 (+) False ubxn10
XR_003403172.2 other upstream 714155 20510244 ~ 20514195 (+) False LOC113530729
TU305571 other upstream 829636 20390809 ~ 20398714 (+) True G258096
TU304946 other upstream 1749455 19478302 ~ 19478895 (+) True G257622
TU306357 other downstream 299255 21538254 ~ 21542254 (+) False LOC117599233
trnal-uaa_2 other downstream 1072807 22311806 ~ 22311888 (+) True trnal-uaa_2
XR_004579671.1 other downstream 1432626 22671625 ~ 22679550 (+) False LOC113530514
TU307769 other downstream 2132748 23371747 ~ 23383653 (+) True LOC117599309
TU307771 other downstream 2132748 23371747 ~ 23383653 (+) False LOC117599309

Expression Profile