RNA id: TU308080


Basic Information

Item Value
RNA id TU308080
length 1906
lncRNA type inter_gene
GC content 0.44
exon number 1
gene id G260217
representative True

Chromosome Information

Item Value
chromosome id NC_047610.1
NCBI id CM018556.1
chromosome length 25111544
location 23867651 ~ 23869556 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

TCTCTGTGCTTCAGTGGCACAATTAGAAACTAAGAATACATTCTGTGTATGAGACTGTGGCTTGATTGGATGAGTGCTACCTTTGGGTTAGAAGATTGCTGGTTCAAACCCCAACCAGAGCTCTAGGCTATGAATGTAGAAGTGTCGATACATTATGAACCCAAACATTGGGTGCTGAAAGAAAACAACCATTTCCTCCTCCAtgaaatgtttctctttcaCTTGGACTGTTGAGCCAGTTATTAAATTGGACAAAAGTCCAATAAGCAACCTCATCACCTACTCTgtggtggtgcagtggataGAGTCATGGTCTCAGATGCTTGCGGTCCTTGGGTCAAATCTGCACTTTTGCTTGTGGGCCAGATTAAGTAGACAAAAGTGAAAATTACTATAAATCAAGCTACTCGTAAGAGACTCTGTGGCTCAATTGGCTGAGCTTCACCTCTGGGCCAAGAGGTTActggttcaaaccccagccagGTCTCCAGGATATGAGCGTAGAAGGTTCAGTAACAGATGATTCAAGCACAAAGTGCAGGAAGGTGTGTGCAGGAAGGCATGGCCCTGAATTGAGGTGGGGGGTAGTTACTGGGCAGCTGTATATAGGCTGTAAAATTACCTATCACCCACACTTTCCTTGGGGTCCTCAAACACCATGCACTCTAGCCACCATTTCATCTTAATCACCTGCTTCACTACCCAACATGTAGCATGTCTGCAGGGGACAAGCCAGAtttgaaccagcaacctctGAGTCGAGAGGCAAGGCTCTTACCACAAAGCCACACAGTCCCACACAAAGAGAGTGATGTTGTAGGATGTTGTCTTTTAAaacaaccaccaccacaaaaaaaaaaaaacccacattgtAAGTTAAGTTAAGTATGAAGGTCCAATCTGAATGCTCAGTAAAATACATGAGGCAGAGTTTTGCAAAAGAGGGGACTGAATACCTGCTCGTTTATGCATTTATCTTATAAGCCTTCTTGTGGTGGCAGCgcgatgcataaaatcatgcaaataaagGTCAAGAGCTAAAAAAATGggtaaaaaatgtgatctcagtggcttTGACCTTggaatggttgttggtgccagatggtctggtttgagtatttcagatactgctgatctccttggattttcacacacaacagtctctacagtgAGCATCAGATTTGTGGGTGgaagcaccttgttgatgagagaggtcaggggAGAACGGCCACACGGGAAGGTTACGggaactcaaataactactctttacaaccatggtaagcagaaaagcacctcagaatgCTGAACATGTCAAACTTGggggtggatgagctacaacagcagaagaccacatcaggttccacatCTGTCAGCCAAATACAGAAATCTGACTGTACAGTGGACAGAgatgaagactgaaaaaatgttGCCTGGTCTGAAGAACTTTGGTTTCTGCTGCAACATGCAGAAGGCAAGGTCAGAATTGGGTGTCTGCAACATGAATCTATGAATCcatcctgccttgtgtcaacactTCAAGCTTCTGGTGGTGGTATAACGGTGtggagaatgttttcttggtacACACTGGGCCCCTTAATGCTTTATCGAGCATCAGTCcttctgagtattgttgctgaccacgtGCATCTCTTTATGGCCACATCTTGTAATGGCTACATCCAGCCCTGTGACAAAGCAGAAGTTGTCTCTAACTGAATCCATGAATATGACGAAgagatcagtgttcttcagtAGCCACTCCAGTCACCAGAACTGAATCTagtagagcacctttgggatgtggcaGAATGGAAGAGTCACAGCATGAaggtgcagctgacaaatctgcggCAATTATGTGAAGCAATCACGTTAACATAGACAAGAACCTTGCGGAATACAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU308086 lncRNA upstream 5081 23861642 ~ 23862570 (+) True G260223
TU308085 lncRNA upstream 40020 23826892 ~ 23827631 (+) True G260222
TU307893 lncRNA upstream 305267 23527428 ~ 23562384 (+) True G260074
TU307905 lncRNA upstream 312574 23554596 ~ 23555077 (+) True G260083
TU307815 lncRNA upstream 393207 23473913 ~ 23474444 (+) True G260011
TU308096 lncRNA downstream 48325 23917881 ~ 23918391 (+) True G260232
XR_004579726.1 lncRNA downstream 132993 24002549 ~ 24003381 (+) True LOC117599261
XR_004579725.1 lncRNA downstream 141119 24010675 ~ 24013004 (+) True LOC117599260
TU308299 lncRNA downstream 153820 24023376 ~ 24030335 (+) True G260410
TU308322 lncRNA downstream 262162 24131718 ~ 24131958 (+) True G260430
XM_026920531.2 mRNA upstream 3213 23809480 ~ 23864438 (+) False ddah1
XM_034311716.1 mRNA upstream 3213 23811487 ~ 23864438 (+) False ddah1
XM_034311717.1 mRNA upstream 3213 23838849 ~ 23864438 (+) False ddah1
XM_026920528.2 mRNA upstream 3217 23815857 ~ 23864434 (+) True ddah1
XM_034311538.1 mRNA upstream 69622 23769235 ~ 23798029 (+) True znhit6
XM_026920271.2 mRNA downstream 3261 23872817 ~ 23875387 (+) True c16h1orf52
XM_026920473.2 mRNA downstream 19150 23888706 ~ 23921976 (+) True syde2
XM_026920474.2 mRNA downstream 19150 23888706 ~ 23921974 (+) False syde2
XM_034311922.1 mRNA downstream 82104 23951660 ~ 23967886 (+) False mcoln3b
XM_026921140.2 mRNA downstream 82105 23951661 ~ 23967886 (+) True mcoln3b
TU307780 other upstream 478337 23387538 ~ 23389314 (+) True G259993
TU307769 other upstream 483998 23371747 ~ 23383653 (+) True LOC117599309
TU307771 other upstream 483998 23371747 ~ 23383653 (+) False LOC117599309
XR_004579671.1 other upstream 1188101 22671625 ~ 22679550 (+) False LOC113530514
trnal-uaa_2 other upstream 1555763 22311806 ~ 22311888 (+) True trnal-uaa_2
TU308306 other downstream 162671 24032227 ~ 24032724 (+) True G260415
TU308384 other downstream 399021 24268577 ~ 24269267 (+) True G260483
XR_004579660.1 other downstream 755381 24624937 ~ 24634545 (+) False ddx58

Expression Profile