RNA id: XM_026921325.2


Basic Information

Item Value
RNA id XM_026921325.2
length 1817
RNA type mRNA
GC content 0.47
exon number 9
gene id syap1
representative False

Chromosome Information

Item Value
chromosome id NC_047610.1
NCBI id CM018556.1
chromosome length 25111544
location 21799824 ~ 21806660 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

AGGCGGCGTCTGCTTTTGCGTACTACTCAGTATGCTAGTGCGCCGCCGTTGTTATGTAGCTCTACGTGGGAAGGCGGATCATGGACTAACATCCCGTTAGCAGGAAGATTTTCTTCGGTTAATTAATTGTTTGAGTAATAGCACTAAAGAAACGATAAGGAAGATGTTTAAAAGCTGGGGAACGTGGCTCGGAATCGAGTCCACACCCGGGTGCGAAAGAGACGAAATCCAGGCCGAGGAAACATGCGGAAGTGACAAGGACAAGGCAGAAAACAGCGCAGTAAACAAACAGGAGTGCAGCGACGACAGGACCGAaaaaatgggagaaaagcaGCCGATTCTGCAGCAAGCCAAAGGCCTGAGTGGATACATTCTGAACTTTGCGAGCAGCGCAACAAAGAAGATCACAGAGTCAGTGGCAGAAACAGCGAGCACCATCAAGAAGACCGTGGAGGAAGGAAACATCGACGGCATCATCGACAAGACCATTCTGGGAGATTTCCAGAAGGAACAGGAAAAGTTTGTTCAGGAGAAGAATGCTAAGAAAACAGATGCAGCGGTGCCTCCCTGGGTGGGCTACAGTGAGGAGGAGACCATTCAGCAGCAGATCTTGGCTTTATCAGCTgaCAAGAGGAACTTCCTTCGCGACCCTCCGGCTGGTGTGCAGTTCCACTTTGACGTTGAGCAGATGTATCCCGTCGCTCTGGTCATGCTACAGGAAGACGAGCTTCTCAACAGGATGCGTTTCGACCTGGTTCCAAAACAtgtgaaaGAGGAGATGTTCTGGAGGAACTATTTCTACCGGGTGTCTCTCATTAAGCAGTCGGCCCAGCTCACGGCGCTGGCGGCACAACAGCAGGCTGcggagaggagagaggacgACAAGAACGGAGCCGATCAGAGCGAGAACACATCAGaatccAGAAGACCAAAAACGCCTCCTACAACCATCAACGCCAAGCCAAAGTCCAGTGAGCAtcatgaggaagaggagatcTCGACCAGCCCTGGCGTATCTGAGTTCGTAAGTGACGCATTCGACTCGTGTAACATCGACCAGGAGGACTTGAGGAAGGAGATGGAGCAGCTGGTACTGgataagaaaaatgaagaagAAGAAGCGTCTGAGTGGGAGCGGGAGCTGCAGCGGGAGCTGCAGGAGTACGAGGTGGTGGCCGAGGCGGATAACCGAGACGAAAACTGGGACCGTGAGATTGAAGAGATGTTGCAGGCTGATTAGCTAATCCCCCACGAGCCCTCACTTTCAGTGTGGAATCATCGCTACACtaaagagacacagagggagagtgaagaaaaaagaacGGACCAAACAAGCCACTACTAAGACTTAAGgcataaacatcacacacagtgCTACATGTACAGCATTGCTCTCTGTTTGATTGAAGTAGGCAGAGATTTGTGTTAAGAATGCATTTCTTATGGAAAAGTAGCATTCAGGGATGTAATCTGTTTCTGTGAAGTAGTGGACTTACAGCGAAAATGCACAGCATCTACAGTAAACTTCTCTCTTCTCACTGATAGATGAATCAAGTGGTTAGTGCTACCTTTTTATATACAACGAATCAGTGTGTATATTCTATTCTTTATTGTCTATCTGTAATAATGAGTGTGATTTTAAGCTCAGAATGATGATTCTGCATGTGACACTTATATCGGACAGATCCTCTGAGGCTGTAGAAGATGAAAGCCGATGAACTTTGatcacttttttctgtttcatctgACAGAAATAGAATGATAGAAATAGAATGTAAGAAtattatgtgtttattaaatgttattttgtctCTAAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU306502 lncRNA upstream 47373 21750011 ~ 21752454 (+) True G258883
XR_003403132.2 lncRNA upstream 197359 21600622 ~ 21602468 (+) True LOC113530300
TU306346 lncRNA upstream 243389 21551918 ~ 21556438 (+) False G258753
TU306351 lncRNA upstream 288833 21499978 ~ 21510994 (+) True G258758
TU306345 lncRNA upstream 303262 21479232 ~ 21496565 (+) True G258753
XR_004579749.1 lncRNA downstream 163718 21970378 ~ 21982618 (+) True LOC117599289
TU306718 lncRNA downstream 199670 22006330 ~ 22006530 (+) True G259086
TU306719 lncRNA downstream 200048 22006708 ~ 22007039 (+) True G259087
TU306725 lncRNA downstream 209451 22016111 ~ 22022398 (+) True G259093
TU306726 lncRNA downstream 209757 22016417 ~ 22022472 (+) False G259093
XM_026921383.2 mRNA upstream 4456 21754850 ~ 21795371 (+) True LOC113530955
XM_026921381.2 mRNA upstream 4456 21754850 ~ 21795371 (+) False LOC113530955
XM_026921382.2 mRNA upstream 4456 21754851 ~ 21795371 (+) False LOC113530955
XM_026921384.2 mRNA upstream 14666 21754850 ~ 21785161 (+) False LOC113530955
XM_026921385.2 mRNA upstream 14666 21754852 ~ 21785161 (+) False LOC113530955
XM_026920916.2 mRNA downstream 1654 21808314 ~ 21828623 (+) True fbxl5
XM_034312133.1 mRNA downstream 32329 21838989 ~ 21857859 (+) True abcg2a
XM_026920921.2 mRNA downstream 148898 21955558 ~ 21958696 (+) False LOC113530692
XM_026920920.2 mRNA downstream 149587 21956247 ~ 21958696 (+) True LOC113530692
XM_026920922.2 mRNA downstream 153767 21960427 ~ 21962912 (+) True LOC113530693
TU306357 other upstream 257573 21538254 ~ 21542254 (+) False LOC117599233
TU306101 other upstream 568956 21228320 ~ 21230871 (+) False si:ch73-290k24.5
XR_004579743.1 other upstream 892577 20903105 ~ 20907250 (+) False ubxn10
TU305940 other upstream 894754 20903147 ~ 20905073 (+) False ubxn10
XR_003403172.2 other upstream 1285632 20510244 ~ 20514195 (+) False LOC113530729
trnal-uaa_2 other downstream 505146 22311806 ~ 22311888 (+) True trnal-uaa_2
XR_004579671.1 other downstream 864965 22671625 ~ 22679550 (+) False LOC113530514
TU307769 other downstream 1565087 23371747 ~ 23383653 (+) True LOC117599309
TU307771 other downstream 1565087 23371747 ~ 23383653 (+) False LOC117599309
TU307780 other downstream 1580878 23387538 ~ 23389314 (+) True G259993

Expression Profile