RNA id: XM_026921381.2


Basic Information

Item Value
RNA id XM_026921381.2
length 3877
RNA type mRNA
GC content 0.39
exon number 6
gene id LOC113530955
representative False

Chromosome Information

Item Value
chromosome id NC_047610.1
NCBI id CM018556.1
chromosome length 25111544
location 21754847 ~ 21795371 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

GACAGTTTTGTGTATCTGTCAGCTAGAAAACTGAGAAGAGAAACGAAGAGCAggaggcaaacacacacactctcgcacactcacacactcgtttacactcagaaacacacacacaggactgaGAAACAGAGCTCTGCTTGTGAACCAGGGCATGCTCGACATTCTTCTGGAAGACATTTGATTTATTCAAGCGGAAAAGATGCAGTTCATGCTGCTCTTCAGCAGGCAAGGCAAGCTGCGCCTGCAGAAATGGTATGTTCCACTGTCCgacaaggagaagaagaagatcacACGTGAGCTGGTACAGACCGTCCTGGCGCGAAAGCCCAAGATGTGTAGCTTCCTGGAGTGGAGAGACCTCAAGATTGTTTACAAAAGGTACGCCAGTTTGTATTTCTGCTGTGCCATCGAGGACCAGGACAACGAGCTGATCACCCTGGAGATCATTCATCGCTACGTGGAGCTGCTGGATAAGTACTTTGGCAGTGTGTGCGAGCTGGACATTATCTTCAACTTTGAAAAAGCCTACTTCATCCTAGACGAGTTTCTTTTGGGCGGAGAAGCTCAAGAGACGTCCAAGAAGAACGTCTTGAAGGCGATCGAACAGGCTGACCTGCTGCAGGAGGATGCCAAAGAAGCAGAAACCCCTCGCAGCGTTCTGGAGGAGATCGGACTCACATAAAAGGCCGAGAAGGACACAAcgtctttcacacacacacacacacacacacacacatacacacatacacacacacccctactgtttgtctgtttaaagatgtagcacacacactcacacaccttaGTGGATTTCGACAATTCATTCATCattgtttctttctctatctgtgtgctttaaacaacacacacaatgtagCACTGTACAGATTCATCAGGAAAACTGACCTTTCCTCACCTTAACTCAGCCTTAAGATCAGCTCAAGTTTACACTCTGTATTCAACAACATCATCTCACACTCTTTTTGCTTCTGCACATTATCAGAAAAGGCAAAacatcacatatacattacCTGTAAAAAGTATTTGAGTGCTTTTTCAGTATTATATTGAATTACAGCATGGACCCaggaagtgaaaaataaaagaaagtgatATTTCTATCCCACACAGAGCTAAAAGATTCTTTAGTTTTGCTCTGGAGATGCTAGTGGCATCCTGGAAGCCGgatcattttctttctcctaATTTGGCATCAGACTTAGAAAGGGAATCGAAGTGGAATTAGATGTTAAGAACCATTCTGATGATAATATACCtccaaatttatttgtaaacgAATTTTTATTCTGATGTTATATTAAGACcttttatttatgaattgtCTTATTGAAACAAAGATGTATTTTatggtcatgtgtgtgtgtgtgatgatttaaacacacagtCTGCATGaagtacaaaactaaagaatcTTCAGATACAAAACATGTTGTGGCTAATTTTCCAGTAagttttgatttctttttttccctccaaactTTTCTGGTAACAGAATTTTTGCTACTCATCGATACTCTATAATGTCAAGGTGAACAAattaattgtggaaaaaaaagtttctaatACATTTGAACACTTAGCAGCAATCACAGTGAATATCTTTGGGtaagttcagttcaattcaattcagttttatttatatagcacttttaaccatggacgttgtcacaaagcagctttacagaaatccgggtatagatttaaatttagccctgatgagcaagccagaggtgatggtggcaaggaaaaacctcctgagacatcatgaggtagaaacctttagaggaaccagactcaaaaagggaCCCATCGTCAGCTAGTGCGACTGTTAATCATTTCTCTTTGTCAACTGTATGAACAGAGCACTTGGAGTATCTGTGCCTTTTTTGTGGCAAAATTGCTCGACAAGTTGGACGGAGATCAGTTGTGAACAGTAAATCATTTCACATATGGACTTTGGACGCTCCGGGAAATGAATCATGTCAGTgtggcttttcttttttcttttttttcttgaaagaaGAGTTTCACTGTGCTTTGAGGATAGTTGTAgcttagaaatgtttttatgtccTTGTTTTATGCACTGATGGTTTTTACCAAAACCTCAAGTTAGTGGTGTGCATCAAGACTGGGATCCTGTGGGATCGAAAAAAAATATAAGTCGCTTTAGTGGgcggtttttactttcatttgttTACATGTAGGAACCaaatgctgccttcaagtcaTGCTCGGAGGTTCGTGTGAATGAGTTCAGAGGTGATAATTATGAcgtggtgtgtgtttaagtggttttggttggggaaaaaaaatggacgaCGTGAGAAAAcgtcttttgtttttatgtttttttgtatcATCAATGACATAAAATTCATTTAGCCTTACTTGGAAAAAAATCGAGACTCGAATATGCAAAATTATCACTTAAATCACACTGTCTGCTGGAGGCGTCACATTGCGACTACATAACTACGATACTATAGTGACGTTCTTGTGCGTTCAGCTCGTGATTGCGATATTTCTGACAAGACTTGAAGGCAGCAGAAGTTCATACAGAAGAAAATCTCACATGTGGGTACAAAGAAAAATAGTAGCAAAAGTGGGCGGagtttaaacaacaacaaaaaaaaaaaggtgtgtgcACGCCTCTACCTCAAATCTCAGTCTCCTTGGTGGTGTTCCTTGTCAATATATttttctcaacttttttttgaAAAGCCTATGACCAGTAATTTAGTTTTGTTAAAGCGAGTGAATATTTAGTTtaattcaaatgattttttttataaataaataaatgaaataattattttttatggattttttccACTTTGACATTATACTCTGTACGGATTAGTGGCACAAATTCTTGTTAAATACATCGTGGTCCTGtgctttaataattaaatgggGAAAGGCCCAAGAGGACAACTTAAATACTTTTTACAGGCACGGTGTCATGATAGGAATAAAAGTCTGCAAAAAGTAAGGTcctggaaagaaaagaagatgaaaatggaaattaaaaaccagaaaaaagaacacaaaaaaaaaacagagaaagggaTTCAATCACAAAACCAAAGagtttatcatttatgtttTCTATCAGTTTACATGTATAAGCAGCAGTGTTTCAGTTCACCTCAGCGAGTTCAGCTGGAGCAGAAAGCACAAGAGACGTATCGACTTCACAGCACTGTACATTCATAATGTTAATAACGCAACACATTAACACAACGATGATCCACTGTGTTAAACTACTGATAGTCAACTGACACTTAAATGCTGTAACTCTTCagatttaaaggagcagtttgtcatttttagagccTGTGAAGTGAATTACAATTGTGACAAAAACATCACGAGCCACTTTCTATTTAAACTAAATTATGACCCACTCTCTATTTACACTCTTTATCTCATGATTTACTTGttaaacagaatgaaaagaCCTGAGGCACTCTCTGTTCTGGCTGAAAGAAATGAACCATGCACATGGCATGACGATGCTGTCCACCAGTTATTACAGGTCTAGAAACACTTTTCAaagttacaaactgcacctttaaatgacttcaaacattcaGACACTTATAATCAGTGCTTACTATGTTTTAtgccatatttatatatacagtgtaggTATATTATGCTCATATTGATCACTGATATCCAGTAAAACTGATGCTGTGACTTTTGCTATATCTGGCCTGTATGGCCCCCAGGATCCTTCCTCCATTCCCCTTCACCCTTCCGTCTCCACATGGAGGAAATGTTGTGGTTCAAAGTAAATCCGTCCTGCTGTGTTTGTGGCTCAACATGGAATAAAATTtgtttacacata

Function

GO:

id name namespace
GO:0006886 intracellular protein transport biological_process
GO:0016192 vesicle-mediated transport biological_process
GO:0030117 membrane coat cellular_component
GO:0008565 obsolete protein transporter activity molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU306502 lncRNA upstream 2396 21750011 ~ 21752454 (+) True G258883
XR_003403132.2 lncRNA upstream 152382 21600622 ~ 21602468 (+) True LOC113530300
TU306346 lncRNA upstream 198412 21551918 ~ 21556438 (+) False G258753
TU306351 lncRNA upstream 243856 21499978 ~ 21510994 (+) True G258758
TU306345 lncRNA upstream 258285 21479232 ~ 21496565 (+) True G258753
XR_004579749.1 lncRNA downstream 175007 21970378 ~ 21982618 (+) True LOC117599289
TU306718 lncRNA downstream 210959 22006330 ~ 22006530 (+) True G259086
TU306719 lncRNA downstream 211337 22006708 ~ 22007039 (+) True G259087
TU306725 lncRNA downstream 220740 22016111 ~ 22022398 (+) True G259093
TU306726 lncRNA downstream 221046 22016417 ~ 22022472 (+) False G259093
XM_026920838.2 mRNA upstream 6447 21674337 ~ 21748403 (+) True LOC113530651
XM_026920839.2 mRNA upstream 9424 21674337 ~ 21745426 (+) False LOC113530651
XM_034311973.1 mRNA upstream 9424 21675084 ~ 21745426 (+) False LOC113530651
XM_026920840.2 mRNA upstream 9680 21674337 ~ 21745170 (+) False LOC113530651
XM_026920094.2 mRNA upstream 128105 21611803 ~ 21626745 (+) False zmp:0000001174
XM_026921326.2 mRNA downstream 4453 21799824 ~ 21806660 (+) True syap1
XM_026921325.2 mRNA downstream 4456 21799827 ~ 21806660 (+) False syap1
XM_026920916.2 mRNA downstream 12943 21808314 ~ 21828623 (+) True fbxl5
XM_034312133.1 mRNA downstream 43618 21838989 ~ 21857859 (+) True abcg2a
XM_026920921.2 mRNA downstream 160187 21955558 ~ 21958696 (+) False LOC113530692
TU306357 other upstream 212596 21538254 ~ 21542254 (+) False LOC117599233
TU306101 other upstream 523979 21228320 ~ 21230871 (+) False si:ch73-290k24.5
XR_004579743.1 other upstream 847600 20903105 ~ 20907250 (+) False ubxn10
TU305940 other upstream 849777 20903147 ~ 20905073 (+) False ubxn10
XR_003403172.2 other upstream 1240655 20510244 ~ 20514195 (+) False LOC113530729
trnal-uaa_2 other downstream 516435 22311806 ~ 22311888 (+) True trnal-uaa_2
XR_004579671.1 other downstream 876254 22671625 ~ 22679550 (+) False LOC113530514
TU307769 other downstream 1576376 23371747 ~ 23383653 (+) True LOC117599309
TU307771 other downstream 1576376 23371747 ~ 23383653 (+) False LOC117599309
TU307780 other downstream 1592167 23387538 ~ 23389314 (+) True G259993

Expression Profile